Wall clock time and date at job start Tue Mar 31 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00239 * 2 1 4 4 H 1.48507 * 109.46983 * 270.00477 * 3 2 1 5 5 H 1.48494 * 109.47146 * 30.00313 * 3 2 1 6 6 H 1.48503 * 109.47099 * 150.00421 * 3 2 1 7 7 C 1.37877 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99920 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00172 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47203 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47067 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47052 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00113 * 180.02562 * 12 11 10 14 14 O 1.21567 * 119.99894 * 359.97438 * 13 12 11 15 15 C 1.47799 * 120.00123 * 179.97438 * 13 12 11 16 16 C 1.39632 * 120.10005 * 359.97438 * 15 13 12 17 17 C 1.37942 * 120.01137 * 180.25675 * 16 15 13 18 18 C 1.38367 * 120.21683 * 359.44109 * 17 16 15 19 19 Cl 1.73602 * 119.90385 * 180.28042 * 18 17 16 20 20 C 1.39125 * 120.19682 * 0.55645 * 18 17 16 21 21 N 1.39783 * 120.00839 * 179.74951 * 20 18 17 22 22 C 1.38582 * 119.98141 * 359.72079 * 20 18 17 23 23 H 0.96996 * 119.99769 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47347 * 59.99831 * 9 7 2 25 25 H 1.09000 * 109.46933 * 299.99748 * 9 7 2 26 26 H 1.09003 * 109.47659 * 60.00152 * 10 9 7 27 27 H 1.09000 * 109.46981 * 299.99732 * 10 9 7 28 28 H 1.09000 * 109.47188 * 60.00205 * 11 10 9 29 29 H 1.09002 * 109.47578 * 299.99685 * 11 10 9 30 30 H 0.96994 * 120.00055 * 359.97438 * 12 11 10 31 31 H 1.08002 * 119.99012 * 359.97048 * 16 15 13 32 32 H 1.08001 * 119.89113 * 179.72186 * 17 16 15 33 33 H 0.96996 * 120.00396 * 179.97438 * 21 20 18 34 34 H 0.97000 * 119.99899 * 359.97338 * 21 20 18 35 35 H 1.08003 * 120.10447 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0397 -4.0180 -0.0015 13 6 7.3647 -4.2644 -0.0018 14 8 8.1548 -3.3404 -0.0032 15 6 7.8573 -5.6578 -0.0005 16 6 6.9518 -6.7207 0.0016 17 6 7.4135 -8.0205 0.0082 18 6 8.7733 -8.2765 0.0010 19 17 9.3454 -9.9155 0.0020 20 6 9.6835 -7.2243 -0.0012 21 7 11.0563 -7.4874 -0.0031 22 6 9.2286 -5.9152 -0.0021 23 1 -0.4849 0.8400 0.0004 24 1 3.8752 -0.6806 0.8887 25 1 3.8745 -0.6802 -0.8912 26 1 3.6578 -3.1508 -0.8907 27 1 3.6584 -3.1502 0.8893 28 1 5.9155 -2.1226 0.8873 29 1 5.9141 -2.1233 -0.8927 30 1 5.4094 -4.7552 0.0000 31 1 5.8897 -6.5250 0.0028 32 1 6.7114 -8.8411 0.0144 33 1 11.6908 -6.7538 -0.0051 34 1 11.3745 -8.4038 -0.0026 35 1 9.9334 -5.0969 -0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079866651.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:28 Heat of formation + Delta-G solvation = -34.354592 kcal Electronic energy + Delta-G solvation = -18452.480704 eV Core-core repulsion = 15282.366743 eV Total energy + Delta-G solvation = -3170.113961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39063 -38.86344 -36.74592 -35.59459 -34.99787 -33.33068 -31.67681 -31.02510 -29.10307 -27.20703 -24.33219 -22.80380 -22.51811 -20.79014 -20.05893 -18.26037 -17.46580 -16.82503 -16.66114 -16.03161 -15.64880 -15.47000 -14.44920 -14.36716 -14.23031 -14.11886 -13.79400 -13.62491 -12.76534 -12.65292 -12.12057 -12.05203 -11.93663 -11.89406 -11.24693 -11.09752 -11.08581 -10.90075 -10.28024 -10.00974 -9.81280 -9.64299 -9.23828 -9.21540 -8.88960 -8.56230 -8.01277 -6.07009 -4.05809 0.46409 1.09601 1.76914 2.70162 3.12105 3.30906 3.38578 3.42640 3.44844 3.60509 4.37485 4.43834 4.59284 4.79689 4.96235 5.04858 5.27102 5.44161 5.49259 5.63089 5.64140 5.84815 5.98546 6.00501 6.23474 6.30044 6.42269 6.66128 6.76629 6.90963 7.21361 7.26481 7.34883 7.55710 7.75429 8.21944 8.49447 8.96800 9.55220 11.06227 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.042026 B = 0.002621 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.088343 B =10681.317608 C =11321.654516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.717 5.717 13 C 0.551 3.449 14 O -0.539 6.539 15 C -0.075 4.075 16 C -0.134 4.134 17 C -0.067 4.067 18 C -0.098 4.098 19 Cl -0.071 7.071 20 C 0.221 3.779 21 N -0.871 5.871 22 C -0.129 4.129 23 H 0.263 0.737 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.400 0.600 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.404 0.596 34 H 0.402 0.598 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.692 -19.265 0.034 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.368 5.368 13 C 0.337 3.663 14 O -0.417 6.417 15 C -0.079 4.079 16 C -0.155 4.155 17 C -0.086 4.086 18 C -0.130 4.130 19 Cl -0.043 7.043 20 C 0.115 3.885 21 N -0.411 5.411 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.236 0.764 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.233 0.767 34 H 0.232 0.768 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 21.104 -18.592 0.036 28.125 hybrid contribution 0.394 0.289 -0.021 0.489 sum 21.498 -18.303 0.015 28.234 Atomic orbital electron populations 1.69911 1.06320 1.26968 1.50980 1.25030 0.94750 0.99245 0.94465 0.86775 0.80409 0.83526 0.78589 1.20246 1.21379 1.18878 1.21094 0.89293 0.94518 1.51115 0.90984 1.19501 0.97291 0.91423 0.96696 1.21719 0.90491 1.01150 1.01844 1.21716 0.96263 0.80777 1.02176 1.46098 1.06405 1.10312 1.73968 1.18213 0.82781 0.88228 0.77029 1.90774 1.55448 1.45608 1.49907 1.19863 0.93615 0.93289 1.01091 1.21073 0.99716 0.91227 1.03511 1.20766 0.92817 0.97465 0.97550 1.20544 0.93698 0.84335 1.14451 1.98346 1.89230 1.19398 1.97306 1.17321 0.84730 0.91869 0.94618 1.42552 1.02869 1.11326 1.84342 1.20634 0.95339 0.94256 1.05091 0.92688 0.96278 0.96709 0.92019 0.91986 0.91522 0.91515 0.76414 0.84649 0.84274 0.76712 0.76845 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 10 C -0.11 -2.07 5.27 -26.73 -0.14 -2.21 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.80 16 12 N -0.72 -9.65 5.51 -61.26 -0.34 -9.99 16 13 C 0.55 7.93 7.77 -12.35 -0.10 7.83 16 14 O -0.54 -9.63 16.34 5.31 0.09 -9.54 16 15 C -0.07 -0.86 5.87 -104.99 -0.62 -1.47 16 16 C -0.13 -1.23 9.53 -39.17 -0.37 -1.61 16 17 C -0.07 -0.56 9.80 -39.64 -0.39 -0.95 16 18 C -0.10 -0.88 6.34 -39.20 -0.25 -1.13 16 19 Cl -0.07 -0.56 27.57 -51.86 -1.43 -1.99 16 20 C 0.22 2.00 6.75 -83.78 -0.57 1.44 16 21 N -0.87 -5.60 9.04 32.41 0.29 -5.31 16 22 C -0.13 -1.37 9.44 -38.98 -0.37 -1.74 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.40 4.28 6.50 -40.82 -0.27 4.02 16 31 H 0.14 0.98 6.39 -52.49 -0.34 0.64 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.40 1.91 8.84 -40.82 -0.36 1.55 16 34 H 0.40 2.20 7.49 -40.82 -0.31 1.89 16 35 H 0.14 1.51 7.65 -52.48 -0.40 1.11 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -32.86 314.83 -8.04 -40.89 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.14 Total: 2.58 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -3.36 Total: -11.49 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.73 Total: -42.13 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.86 -8.04 -40.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079866651.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.538 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds