Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47210 * 2 1 4 4 C 1.46496 * 120.00179 * 262.47530 * 3 2 1 5 5 C 1.50699 * 109.47509 * 270.00411 * 4 3 2 6 6 H 1.07995 * 119.99717 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99684 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99685 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00688 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46972 * 89.99678 * 9 7 5 11 11 H 1.48494 * 109.47658 * 210.00013 * 9 7 5 12 12 H 1.48500 * 109.46887 * 330.00433 * 9 7 5 13 13 C 1.34780 * 119.99778 * 82.48406 * 3 2 1 14 14 O 1.21625 * 119.99823 * 182.37718 * 13 3 2 15 15 C 1.47167 * 120.00116 * 2.36623 * 13 3 2 16 16 C 1.36618 * 125.15987 * 172.24091 * 15 13 3 17 17 C 1.36796 * 114.74386 * 179.97438 * 16 15 13 18 18 C 1.36621 * 114.74523 * 359.97438 * 17 16 15 19 19 C 1.47169 * 125.16120 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99973 * 180.02562 * 19 18 17 21 21 O 1.21625 * 120.00091 * 0.02562 * 19 18 17 22 22 S 1.75835 * 109.67678 * 0.02562 * 18 17 16 23 23 H 1.09005 * 109.46628 * 59.99707 * 1 2 3 24 24 H 1.08994 * 109.47316 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46713 * 300.00323 * 1 2 3 26 26 H 1.09003 * 109.47102 * 240.00094 * 2 1 3 27 27 H 1.09005 * 109.46628 * 120.00293 * 2 1 3 28 28 H 1.09003 * 109.47163 * 30.01083 * 4 3 2 29 29 H 1.09003 * 109.46993 * 149.99834 * 4 3 2 30 30 H 0.97001 * 119.99871 * 180.02562 * 8 7 5 31 31 H 1.07994 * 122.62930 * 0.22503 * 16 15 13 32 32 H 1.07998 * 122.62778 * 180.02562 * 17 16 15 33 33 H 0.97000 * 120.00069 * 0.02562 * 20 19 18 34 34 H 0.96992 * 119.99904 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4192 2.0164 -1.2577 5 6 3.8846 1.7646 -1.5031 6 1 4.4599 1.1893 -0.7929 7 6 4.4910 2.2697 -2.6337 8 7 5.7698 2.0495 -2.8481 9 14 3.4960 3.2653 -3.8618 10 1 3.5496 4.7028 -3.4927 11 1 4.0623 3.0821 -5.2222 12 1 2.0850 2.8028 -3.8464 13 6 2.0991 2.0673 1.1572 14 8 2.4634 3.2277 1.1520 15 6 1.7462 1.4126 2.4271 16 6 1.9302 1.9527 3.6684 17 6 1.5246 1.1572 4.7048 18 6 1.0008 -0.0476 4.3299 19 6 0.4951 -1.0761 5.2532 20 7 -0.0007 -2.2317 4.7684 21 8 0.5247 -0.8832 6.4537 22 16 1.0226 -0.1830 2.5769 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8362 1.5978 -2.0782 29 1 2.2403 3.0898 -1.1958 30 1 6.1965 2.4051 -3.6433 31 1 2.3585 2.9325 3.8195 32 1 1.6108 1.4585 5.7384 33 1 -0.0240 -2.3858 3.8110 34 1 -0.3337 -2.9097 5.3769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084409217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -30.452215 kcal Electronic energy + Delta-G solvation = -19643.021651 eV Core-core repulsion = 16475.120617 eV Total energy + Delta-G solvation = -3167.901035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68990 -39.43801 -37.07891 -35.62288 -33.97780 -32.90838 -30.87250 -29.91351 -27.94865 -25.58983 -23.34077 -22.81254 -21.79726 -20.07955 -19.20683 -17.78865 -17.27449 -17.02972 -16.82143 -15.83434 -15.24499 -15.10375 -14.81806 -14.63829 -14.14580 -13.98420 -13.55492 -13.13298 -12.75860 -12.55279 -12.40108 -12.26027 -11.99833 -11.58343 -11.33234 -11.15008 -10.78560 -10.60847 -10.32269 -10.21929 -10.04488 -9.67433 -9.43110 -8.85869 -8.67145 -8.47545 -7.94617 -6.16721 -4.17219 0.12160 1.32404 1.69366 2.11530 3.02646 3.21385 3.22994 3.28569 3.31200 3.44349 3.61221 4.31969 4.63600 4.72733 4.93394 5.16091 5.19676 5.21446 5.35904 5.42907 5.69513 5.87812 5.90112 6.03243 6.17715 6.25374 6.44253 6.54899 6.80126 6.97332 7.08645 7.48872 7.93052 7.94084 8.34996 8.64955 8.86142 9.42044 10.96353 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.004452 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.441591 B = 6287.791639 C = 6597.554169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 N -0.583 5.583 4 C 0.217 3.783 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.575 3.425 14 O -0.518 6.518 15 C -0.207 4.207 16 C -0.085 4.085 17 C -0.061 4.061 18 C -0.296 4.296 19 C 0.598 3.402 20 N -0.851 5.851 21 O -0.535 6.535 22 S 0.223 5.777 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.400 0.600 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.746 -9.210 9.372 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.032 4.032 3 N -0.314 5.314 4 C 0.097 3.903 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.360 3.640 14 O -0.396 6.396 15 C -0.329 4.329 16 C -0.117 4.117 17 C -0.094 4.094 18 C -0.416 4.416 19 C 0.383 3.617 20 N -0.415 5.415 21 O -0.413 6.413 22 S 0.493 5.507 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.228 0.772 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -13.763 -9.408 8.927 18.911 hybrid contribution 0.062 1.105 0.062 1.109 sum -13.701 -8.303 8.989 18.370 Atomic orbital electron populations 1.22506 0.95836 1.02799 1.03007 1.21789 0.94150 0.84310 1.02993 1.47860 1.62576 1.12700 1.08258 1.19771 0.96635 0.94355 0.79502 1.21293 0.92564 1.35502 1.08002 0.90622 1.24844 0.94810 0.95501 0.97650 1.69893 1.10164 1.45360 1.27763 0.86858 0.80635 0.81452 0.80801 1.19781 1.20958 1.19018 1.17041 0.78844 0.86136 0.81932 1.90805 1.46953 1.16049 1.85780 1.25263 1.09757 0.98913 0.98952 1.20547 0.99866 1.01734 0.89557 1.20486 0.96332 0.91562 1.01040 1.25492 1.13610 1.00865 1.01629 1.17143 0.76388 0.81103 0.87044 1.43672 1.66566 1.19340 1.11909 1.90838 1.56249 1.79059 1.15190 1.84622 1.56332 1.14429 0.95367 0.91233 0.90849 0.91944 0.87691 0.91256 0.94717 0.94079 0.92411 0.82416 0.83199 0.77171 0.76121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.93 37.16 0.33 -1.64 16 2 C 0.09 1.34 5.67 -4.04 -0.02 1.31 16 3 N -0.58 -11.41 2.48 -176.43 -0.44 -11.85 16 4 C 0.22 5.04 4.21 -5.20 -0.02 5.02 16 5 C -0.54 -14.81 9.94 -34.44 -0.34 -15.15 16 6 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 9 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 13 C 0.58 11.61 7.59 -12.63 -0.10 11.51 16 14 O -0.52 -12.50 16.40 5.26 0.09 -12.41 16 15 C -0.21 -3.26 6.13 -36.54 -0.22 -3.49 16 16 C -0.08 -1.22 9.89 -40.69 -0.40 -1.62 16 17 C -0.06 -0.79 9.88 -40.69 -0.40 -1.19 16 18 C -0.30 -3.63 6.46 -36.54 -0.24 -3.87 16 19 C 0.60 7.17 8.07 -12.63 -0.10 7.07 16 20 N -0.85 -6.40 8.87 30.37 0.27 -6.13 16 21 O -0.54 -8.30 17.65 5.26 0.09 -8.21 16 22 S 0.22 2.49 14.58 -107.50 -1.57 0.92 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.68 6.02 -44.79 -0.27 0.41 16 26 H 0.10 1.50 8.02 -51.93 -0.42 1.08 16 27 H 0.07 0.90 4.42 -21.82 -0.10 0.80 16 28 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.04 1.02 6.82 -51.93 -0.35 0.67 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.16 2.21 8.05 -52.49 -0.42 1.79 16 32 H 0.15 1.77 8.04 -52.49 -0.42 1.34 16 33 H 0.40 2.13 7.93 -40.82 -0.32 1.81 16 34 H 0.41 2.32 8.93 -40.82 -0.36 1.96 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -35.25 302.41 -5.98 -41.23 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.47 Total: 1.91 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.62 Total: -0.03 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.61 Total: -44.07 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.18 Total: -20.62 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.57 Total: 0.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.25 -5.98 -41.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084409217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.777 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds