Wall clock time and date at job start Tue Mar 31 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38298 * 119.97275 * 2 1 4 4 C 1.38244 * 120.14921 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.09212 * 0.25355 * 4 3 2 6 6 C 1.38798 * 119.93993 * 359.47370 * 5 4 3 7 7 N 1.40009 * 120.07718 * 180.24896 * 6 5 4 8 8 C 1.34777 * 119.99833 * 325.30499 * 7 6 5 9 9 O 1.21586 * 119.99950 * 4.45331 * 8 7 6 10 10 N 1.34773 * 119.99876 * 184.45327 * 8 7 6 11 11 C 1.46498 * 120.00208 * 0.02562 * 10 8 7 12 12 C 1.46502 * 119.99759 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47090 * 90.00540 * 12 10 8 14 14 H 1.08003 * 119.99513 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00228 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99587 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99963 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47184 * 90.00481 * 17 15 13 19 19 H 1.48505 * 109.47146 * 210.00194 * 17 15 13 20 20 H 1.48501 * 109.47270 * 330.00098 * 17 15 13 21 21 C 1.38182 * 119.97071 * 179.97438 * 2 1 3 22 22 Cl 1.73599 * 120.04508 * 0.02562 * 21 2 1 23 23 H 1.09005 * 109.47292 * 89.99779 * 1 2 3 24 24 H 1.08996 * 109.47253 * 209.99741 * 1 2 3 25 25 H 1.09003 * 109.47025 * 329.99741 * 1 2 3 26 26 H 1.08008 * 119.92603 * 359.97438 * 3 2 1 27 27 H 1.08006 * 119.95876 * 179.97438 * 4 3 2 28 28 H 1.08003 * 120.03012 * 179.72301 * 5 4 3 29 29 H 0.96994 * 120.00055 * 145.29254 * 7 6 5 30 30 H 1.08998 * 109.47148 * 89.99706 * 11 10 8 31 31 H 1.09001 * 109.47548 * 209.99526 * 11 10 8 32 32 H 1.09006 * 109.46898 * 330.00083 * 11 10 8 33 33 H 1.09008 * 109.47075 * 210.00241 * 12 10 8 34 34 H 1.09000 * 109.47538 * 329.99965 * 12 10 8 35 35 H 0.97005 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2023 -0.0005 5 6 4.2768 0.0090 -0.0064 6 6 3.5872 -1.1956 -0.0006 7 7 4.2901 -2.4064 -0.0013 8 6 5.4553 -2.5089 -0.6707 9 8 5.9369 -1.5293 -1.2063 10 7 6.0866 -3.6972 -0.7466 11 6 5.5061 -4.8776 -0.1018 12 6 7.3530 -3.8086 -1.4748 13 6 8.4991 -3.5448 -0.5327 14 1 8.3038 -3.3165 0.5047 15 6 9.7971 -3.5949 -0.9950 16 7 10.0349 -3.8724 -2.2583 17 14 11.2178 -3.2671 0.1728 18 1 11.6527 -4.5439 0.7939 19 1 12.3507 -2.6720 -0.5807 20 1 10.7794 -2.3247 1.2335 21 6 2.1973 -1.1970 0.0005 22 17 1.3297 -2.7007 0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6562 2.1324 -0.0004 27 1 4.1168 2.1397 -0.0010 28 1 5.3568 0.0135 -0.0113 29 1 3.9385 -3.1715 0.4803 30 1 4.8478 -5.3885 -0.8044 31 1 6.3043 -5.5534 0.2053 32 1 4.9342 -4.5692 0.7734 33 1 7.4468 -4.8126 -1.8890 34 1 7.3723 -3.0786 -2.2840 35 1 10.9480 -3.9073 -2.5837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085616812.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:07 Heat of formation + Delta-G solvation = -4.809306 kcal Electronic energy + Delta-G solvation = -19637.042812 eV Core-core repulsion = 16468.210030 eV Total energy + Delta-G solvation = -3168.832781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36572 -38.72402 -36.45490 -35.20599 -34.52294 -32.68203 -32.16858 -29.61459 -27.67688 -26.92216 -25.82460 -23.41475 -22.26588 -21.51219 -19.29394 -17.95777 -16.73986 -16.59872 -16.34426 -15.59335 -15.02222 -14.67627 -14.31377 -14.16770 -13.79430 -13.32222 -13.14611 -12.93201 -12.45204 -12.37862 -12.20305 -12.00383 -11.82665 -11.49138 -11.42887 -11.21687 -10.92900 -10.79525 -10.58726 -10.18877 -10.07450 -9.67055 -9.29262 -8.58083 -8.44985 -8.04993 -7.62917 -6.05597 -4.10553 1.20033 1.35576 2.12189 3.10541 3.29404 3.36253 3.40937 3.56632 3.94091 4.35999 4.49649 4.70418 4.88003 5.18279 5.27920 5.30476 5.42653 5.47605 5.49493 5.57080 5.74635 5.84049 5.98005 6.09911 6.27790 6.30495 6.53657 6.66419 6.74229 7.09819 7.31380 7.46131 7.61486 7.91719 8.20809 8.51042 8.89728 9.16976 9.54776 11.02314 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.004334 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.760129 B = 6458.281571 C = 7123.666512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.091 4.091 5 C -0.117 4.117 6 C 0.196 3.804 7 N -0.694 5.694 8 C 0.699 3.301 9 O -0.567 6.567 10 N -0.609 5.609 11 C 0.083 3.917 12 C 0.259 3.741 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.077 4.077 22 Cl -0.072 7.072 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.155 0.845 29 H 0.404 0.596 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.620 4.449 6.168 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.063 4.063 3 C -0.157 4.157 4 C -0.110 4.110 5 C -0.138 4.138 6 C 0.098 3.902 7 N -0.343 5.343 8 C 0.401 3.599 9 O -0.443 6.443 10 N -0.344 5.344 11 C -0.061 4.061 12 C 0.140 3.860 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.106 4.106 22 Cl -0.044 7.044 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.172 0.828 29 H 0.241 0.759 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.075 4.868 5.587 19.535 hybrid contribution 0.652 -0.518 0.853 1.192 sum -17.423 4.350 6.440 19.078 Atomic orbital electron populations 1.20823 0.90433 1.03144 1.02757 1.19482 0.96304 0.90910 0.99651 1.20887 0.94207 0.96732 1.03916 1.21158 0.93906 0.98091 0.97851 1.21492 1.02316 0.89882 1.00084 1.17297 0.88109 0.86678 0.98087 1.43014 1.23927 1.12618 1.54778 1.15879 0.79571 0.84777 0.79666 1.90880 1.66333 1.35814 1.51257 1.47502 1.25337 1.05803 1.55801 1.21610 0.99034 0.89420 0.96061 1.19280 0.76736 0.98011 0.91960 1.21447 0.90804 1.48255 0.96180 0.92451 1.24924 0.98791 0.95086 0.95239 1.69931 1.20710 1.48827 1.13856 0.86489 0.81725 0.78365 0.80780 1.20658 1.21063 1.19918 1.20581 0.90229 0.87154 1.12677 1.98325 1.76407 1.32454 1.97188 0.90821 0.91027 0.91227 0.85469 0.85241 0.82799 0.75856 0.93487 0.90105 0.93256 0.94670 0.93584 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.61 36.01 0.35 -0.67 16 2 C -0.06 -0.74 5.88 -104.62 -0.62 -1.35 16 3 C -0.14 -1.56 9.70 -39.56 -0.38 -1.95 16 4 C -0.09 -1.18 10.04 -39.61 -0.40 -1.58 16 5 C -0.12 -1.92 8.70 -39.40 -0.34 -2.26 16 6 C 0.20 3.19 6.31 -83.64 -0.53 2.66 16 7 N -0.69 -11.84 4.93 -14.20 -0.07 -11.91 16 8 C 0.70 15.07 8.12 -86.92 -0.71 14.36 16 9 O -0.57 -14.30 13.34 5.29 0.07 -14.23 16 10 N -0.61 -13.08 2.86 -188.74 -0.54 -13.62 16 11 C 0.08 1.32 10.24 59.85 0.61 1.93 16 12 C 0.26 6.77 5.16 -5.19 -0.03 6.74 16 13 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 14 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.08 -1.06 6.33 -39.32 -0.25 -1.31 16 22 Cl -0.07 -0.88 26.30 -51.86 -1.36 -2.24 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.62 6.90 -51.93 -0.36 0.27 16 25 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 27 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 28 H 0.15 2.93 6.20 -52.48 -0.33 2.61 16 29 H 0.40 5.85 5.78 -40.82 -0.24 5.61 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.05 0.65 6.30 -51.93 -0.33 0.32 16 33 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16 34 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -32.32 311.84 -8.32 -40.64 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.13 Total: 2.59 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -2.71 Total: 3.04 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.13 Total: -51.22 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.36 Total: -2.24 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.32 -8.32 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085616812.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.830 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds