Wall clock time and date at job start Tue Mar 31 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38298 * 119.97275 * 2 1 4 4 C 1.38244 * 120.14921 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.09212 * 0.25355 * 4 3 2 6 6 C 1.38798 * 119.93993 * 359.47370 * 5 4 3 7 7 N 1.40009 * 120.07718 * 180.24896 * 6 5 4 8 8 C 1.34777 * 119.99833 * 325.30499 * 7 6 5 9 9 O 1.21586 * 119.99950 * 4.45331 * 8 7 6 10 10 N 1.34773 * 119.99876 * 184.45327 * 8 7 6 11 11 C 1.46498 * 120.00208 * 0.02562 * 10 8 7 12 12 C 1.46502 * 119.99759 * 179.97438 * 10 8 7 13 13 C 1.50699 * 109.47090 * 90.00540 * 12 10 8 14 14 H 1.08003 * 119.99513 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00228 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99587 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99963 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47184 * 90.00481 * 17 15 13 19 19 H 1.48505 * 109.47146 * 210.00194 * 17 15 13 20 20 H 1.48501 * 109.47270 * 330.00098 * 17 15 13 21 21 C 1.38182 * 119.97071 * 179.97438 * 2 1 3 22 22 Cl 1.73599 * 120.04508 * 0.02562 * 21 2 1 23 23 H 1.09005 * 109.47292 * 89.99779 * 1 2 3 24 24 H 1.08996 * 109.47253 * 209.99741 * 1 2 3 25 25 H 1.09003 * 109.47025 * 329.99741 * 1 2 3 26 26 H 1.08008 * 119.92603 * 359.97438 * 3 2 1 27 27 H 1.08006 * 119.95876 * 179.97438 * 4 3 2 28 28 H 1.08003 * 120.03012 * 179.72301 * 5 4 3 29 29 H 0.96994 * 120.00055 * 145.29254 * 7 6 5 30 30 H 1.08998 * 109.47148 * 89.99706 * 11 10 8 31 31 H 1.09001 * 109.47548 * 209.99526 * 11 10 8 32 32 H 1.09006 * 109.46898 * 330.00083 * 11 10 8 33 33 H 1.09008 * 109.47075 * 210.00241 * 12 10 8 34 34 H 1.09000 * 109.47538 * 329.99965 * 12 10 8 35 35 H 0.97005 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5804 1.2023 -0.0005 5 6 4.2768 0.0090 -0.0064 6 6 3.5872 -1.1956 -0.0006 7 7 4.2901 -2.4064 -0.0013 8 6 5.4553 -2.5089 -0.6707 9 8 5.9369 -1.5293 -1.2063 10 7 6.0866 -3.6972 -0.7466 11 6 5.5061 -4.8776 -0.1018 12 6 7.3530 -3.8086 -1.4748 13 6 8.4991 -3.5448 -0.5327 14 1 8.3038 -3.3165 0.5047 15 6 9.7971 -3.5949 -0.9950 16 7 10.0349 -3.8724 -2.2583 17 14 11.2178 -3.2671 0.1728 18 1 11.6527 -4.5439 0.7939 19 1 12.3507 -2.6720 -0.5807 20 1 10.7794 -2.3247 1.2335 21 6 2.1973 -1.1970 0.0005 22 17 1.3297 -2.7007 0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6562 2.1324 -0.0004 27 1 4.1168 2.1397 -0.0010 28 1 5.3568 0.0135 -0.0113 29 1 3.9385 -3.1715 0.4803 30 1 4.8478 -5.3885 -0.8044 31 1 6.3043 -5.5534 0.2053 32 1 4.9342 -4.5692 0.7734 33 1 7.4468 -4.8126 -1.8890 34 1 7.3723 -3.0786 -2.2840 35 1 10.9480 -3.9073 -2.5837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085616812.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:07 Heat of formation + Delta-G solvation = -24.421790 kcal Electronic energy + Delta-G solvation = -19637.893273 eV Core-core repulsion = 16468.210030 eV Total energy + Delta-G solvation = -3169.683242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.77872 -40.00531 -37.47122 -36.83628 -36.05460 -34.69533 -33.23249 -30.92884 -29.47567 -27.82757 -27.40176 -25.26205 -23.37745 -22.87054 -20.76726 -19.42830 -18.69806 -18.09857 -17.54403 -16.84949 -16.77307 -16.32557 -15.75784 -15.21614 -15.06205 -14.78449 -14.47538 -14.30150 -13.95456 -13.55621 -13.39411 -13.27387 -13.15571 -12.89554 -12.80947 -12.54552 -12.49501 -12.38419 -12.20299 -11.79064 -11.75127 -11.40760 -10.96612 -10.63928 -9.61440 -9.60659 -9.06049 -8.22149 -6.37168 0.13575 0.27859 1.07855 1.36891 1.39796 1.49760 1.64623 2.09123 2.38678 2.70319 2.95784 3.07799 3.74692 3.99138 4.18094 4.25045 4.30907 4.41298 4.57939 4.66856 4.77987 4.83927 4.85978 4.91994 5.14025 5.19746 5.22739 5.33941 5.49702 5.52151 5.54879 5.73951 5.94113 5.97539 6.04666 6.70893 6.93946 7.29336 7.54034 8.84600 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027505 B = 0.004334 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.760129 B = 6458.281571 C = 7123.666512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.060 4.060 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.146 4.146 6 C 0.164 3.836 7 N -0.677 5.677 8 C 0.695 3.305 9 O -0.614 6.614 10 N -0.618 5.618 11 C 0.078 3.922 12 C 0.276 3.724 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.275 1.275 21 C -0.081 4.081 22 Cl -0.059 7.059 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.168 0.832 27 H 0.150 0.850 28 H 0.116 0.884 29 H 0.415 0.585 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.001 0.999 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.759 5.047 7.653 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.061 4.061 3 C -0.143 4.143 4 C -0.109 4.109 5 C -0.167 4.167 6 C 0.068 3.932 7 N -0.328 5.328 8 C 0.397 3.603 9 O -0.494 6.494 10 N -0.353 5.353 11 C -0.064 4.064 12 C 0.155 3.845 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.793 3.207 18 H -0.188 1.188 19 H -0.206 1.206 20 H -0.200 1.200 21 C -0.110 4.110 22 Cl -0.030 7.030 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.185 0.815 27 H 0.168 0.832 28 H 0.134 0.866 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.019 0.981 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.284 5.436 7.112 22.171 hybrid contribution 1.173 -0.650 0.379 1.394 sum -19.111 4.786 7.491 21.077 Atomic orbital electron populations 1.20919 0.87767 1.04557 1.03764 1.19985 0.98173 0.90229 0.97721 1.21340 0.93379 0.98232 1.01300 1.21414 0.95042 0.97536 0.96958 1.21341 1.00849 0.91805 1.02704 1.17507 0.89241 0.85972 1.00517 1.42645 1.22462 1.13672 1.54011 1.16031 0.80508 0.84073 0.79669 1.90844 1.67869 1.37404 1.53251 1.47372 1.24313 1.07603 1.55965 1.21889 0.99477 0.87590 0.97486 1.18740 0.78730 0.96062 0.91017 1.21691 0.91923 1.48497 0.96151 0.93008 1.25823 1.01570 0.94591 0.96923 1.70045 1.21553 1.49460 1.15607 0.85408 0.78095 0.78778 0.78453 1.18788 1.20553 1.19979 1.20700 0.89331 0.88655 1.12337 1.98325 1.75779 1.31752 1.97116 0.89824 0.90910 0.88634 0.81470 0.83215 0.86608 0.74472 0.91046 0.90247 0.90227 0.95128 0.98058 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.61 71.24 0.68 -0.86 16 2 C -0.06 -1.24 5.88 -19.86 -0.12 -1.36 16 3 C -0.12 -2.40 9.70 22.29 0.22 -2.18 16 4 C -0.09 -2.26 10.04 22.25 0.22 -2.04 16 5 C -0.15 -4.97 8.70 22.39 0.19 -4.77 16 6 C 0.16 5.38 6.31 38.15 0.24 5.62 16 7 N -0.68 -23.50 4.93 -317.09 -1.56 -25.06 16 8 C 0.70 31.27 8.12 179.06 1.45 32.73 16 9 O -0.61 -33.11 13.34 -3.99 -0.05 -33.16 16 10 N -0.62 -27.36 2.86 -869.30 -2.48 -29.84 16 11 C 0.08 2.43 10.24 127.77 1.31 3.74 16 12 C 0.28 15.10 5.16 85.63 0.44 15.54 16 13 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 14 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 15 C 0.01 0.59 5.46 84.66 0.46 1.05 16 16 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 C -0.08 -2.11 6.33 22.44 0.14 -1.97 16 22 Cl -0.06 -1.31 26.30 -2.72 -0.07 -1.38 16 23 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.07 1.01 6.90 -2.39 -0.02 0.99 16 25 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 26 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 28 H 0.12 4.81 6.20 -2.91 -0.02 4.80 16 29 H 0.42 11.79 5.78 -92.71 -0.54 11.26 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.08 1.97 6.30 -2.38 -0.02 1.95 16 33 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 34 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 35 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -73.94 311.84 4.21 -69.72 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.58 Total: 14.32 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 5.49 Total: 14.11 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -3.76 Total: -110.75 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.05 Total: -33.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.07 Total: -1.38 kcal Total: -73.94 4.21 -69.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085616812.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.301 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds