Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.41539 * 126.46418 * 97.04655 * 3 2 1 5 5 N 1.30283 * 108.46124 * 179.97438 * 4 3 2 6 6 N 1.39925 * 109.27578 * 0.02562 * 5 4 3 7 7 C 1.34781 * 125.86953 * 180.02562 * 6 5 4 8 8 O 1.21526 * 119.99686 * 175.27974 * 7 6 5 9 9 C 1.47426 * 119.99675 * 355.27246 * 7 6 5 10 10 C 1.40113 * 119.90695 * 7.66060 * 9 7 6 11 11 C 1.36277 * 120.09720 * 180.25214 * 10 9 7 12 12 C 1.40922 * 119.89954 * 359.47327 * 11 10 9 13 13 C 1.41043 * 120.09646 * 180.27337 * 12 11 10 14 14 H 1.08004 * 120.00312 * 145.77053 * 13 12 11 15 15 C 1.40274 * 120.00181 * 325.78257 * 13 12 11 16 16 N 1.30624 * 119.99807 * 2.88624 * 15 13 12 17 17 Si 1.86797 * 119.99976 * 182.89462 * 15 13 12 18 18 H 1.48498 * 109.47215 * 89.99749 * 17 15 13 19 19 H 1.48500 * 109.46983 * 209.99441 * 17 15 13 20 20 H 1.48499 * 109.47298 * 329.99101 * 17 15 13 21 21 C 1.40931 * 119.81099 * 0.25729 * 12 11 10 22 22 C 1.36270 * 119.89614 * 359.97438 * 21 12 11 23 23 C 1.36289 * 108.25866 * 0.26028 * 6 5 4 24 24 N 1.37873 * 126.53480 * 179.74031 * 23 6 5 25 25 H 1.07996 * 125.76697 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.95433 * 0.02562 * 10 9 7 27 27 H 1.07994 * 120.04681 * 179.75190 * 11 10 9 28 28 H 0.96994 * 119.99758 * 180.02562 * 16 15 13 29 29 H 1.07993 * 120.04946 * 180.02562 * 21 12 11 30 30 H 1.08001 * 119.95104 * 180.02562 * 22 21 12 31 31 H 0.96998 * 120.00107 * 359.97438 * 24 23 6 32 32 H 0.97008 * 120.00057 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.4091 0.1407 -1.1297 5 7 4.6481 0.0924 -0.7300 6 7 4.6793 -0.0794 0.6583 7 6 5.7888 -0.1719 1.4179 8 8 5.6933 -0.2345 2.6278 9 6 7.1181 -0.1972 0.7810 10 6 7.2378 0.0357 -0.5955 11 6 8.4641 0.0081 -1.1892 12 6 9.6141 -0.2442 -0.4146 13 6 10.8859 -0.2680 -1.0238 14 1 11.7508 0.0862 -0.4824 15 6 11.0277 -0.7514 -2.3329 16 7 9.9744 -1.1268 -3.0081 17 14 12.7227 -0.8585 -3.1106 18 1 13.3173 -2.1879 -2.8205 19 1 12.6054 -0.6788 -4.5800 20 1 13.5929 0.2061 -2.5497 21 6 9.4896 -0.4723 0.9705 22 6 8.2589 -0.4476 1.5551 23 6 3.3949 -0.1425 1.1097 24 7 2.9918 -0.3117 2.4173 25 1 3.0794 0.2663 -2.1504 26 1 6.3565 0.2337 -1.1875 27 1 8.5550 0.1838 -2.2508 28 1 10.0724 -1.4614 -3.9132 29 1 10.3683 -0.6656 1.5679 30 1 8.1626 -0.6219 2.6166 31 1 3.6533 -0.3997 3.1212 32 1 2.0466 -0.3436 2.6332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089486443.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = 97.440731 kcal Electronic energy + Delta-G solvation = -20348.343596 eV Core-core repulsion = 17082.837216 eV Total energy + Delta-G solvation = -3265.506381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83200 -38.71808 -37.28298 -36.32866 -35.03454 -33.91907 -32.46029 -30.22002 -29.57482 -28.98812 -26.40595 -24.06584 -22.52655 -21.55553 -20.87794 -19.84524 -18.41900 -17.58821 -17.02423 -16.49688 -16.02720 -15.81890 -15.53674 -14.81034 -14.27257 -13.81845 -13.75597 -13.31052 -13.04044 -12.95259 -12.81484 -12.59251 -12.11811 -11.96268 -11.77848 -11.50514 -11.29777 -11.10023 -10.72721 -10.52505 -10.18779 -9.75775 -9.56180 -9.49980 -9.18842 -8.03295 -7.75940 -7.57290 -6.99688 -4.75425 1.04034 1.99994 2.19888 2.30439 2.73932 2.86845 2.91919 2.95471 3.02254 3.51494 3.53050 3.64146 3.71299 4.10712 4.46378 4.68121 4.90020 5.36022 5.43827 5.58067 6.03612 6.15427 6.32082 6.54419 6.74408 6.85485 6.94093 6.99491 7.13256 7.28354 7.43807 7.52925 7.68237 7.70524 7.81627 7.83790 7.99783 8.24382 8.39724 8.54130 8.67024 9.86945 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.003944 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.089904 B = 7096.829836 C = 7949.031035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.305 3.695 3 C -0.277 4.277 4 C 0.144 3.856 5 N -0.266 5.266 6 N -0.368 5.368 7 C 0.594 3.406 8 O -0.535 6.535 9 C -0.285 4.285 10 C -0.058 4.058 11 C -0.178 4.178 12 C 0.132 3.868 13 C -0.435 4.435 14 H 0.085 0.915 15 C 0.068 3.932 16 N -0.776 5.776 17 Si 0.922 3.078 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.233 4.233 22 C -0.022 4.022 23 C 0.447 3.553 24 N -0.817 5.817 25 H 0.200 0.800 26 H 0.148 0.852 27 H 0.132 0.868 28 H 0.287 0.713 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.423 0.577 32 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 0.984 1.804 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.009 4.009 3 C -0.298 4.298 4 C -0.050 4.050 5 N -0.083 5.083 6 N -0.169 5.169 7 C 0.400 3.600 8 O -0.412 6.412 9 C -0.290 4.290 10 C -0.077 4.077 11 C -0.197 4.197 12 C 0.128 3.872 13 C -0.463 4.463 14 H 0.103 0.897 15 C -0.153 4.153 16 N -0.399 5.399 17 Si 0.746 3.254 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.252 4.252 22 C -0.041 4.041 23 C 0.215 3.785 24 N -0.365 5.365 25 H 0.217 0.783 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.259 0.741 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.578 0.883 2.025 6.939 hybrid contribution 0.201 -0.322 0.245 0.452 sum -6.377 0.561 2.270 6.793 Atomic orbital electron populations 1.81259 1.11519 1.13755 1.07044 1.24351 0.90967 0.91707 0.93862 1.15293 0.85600 1.36130 0.92729 1.24142 0.88889 0.92978 0.99023 1.77287 1.18573 1.25764 0.86683 1.47532 1.03404 1.58680 1.07299 1.19022 0.83148 0.73018 0.84814 1.90589 1.85907 1.50988 1.13731 1.18553 0.88548 1.26518 0.95358 1.21893 0.99299 0.93597 0.92946 1.21329 0.91363 1.06020 1.00987 1.18011 0.93861 0.84311 0.91011 1.19925 0.94917 1.34024 0.97439 0.89678 1.26144 0.99456 0.93070 0.96613 1.69680 1.30941 1.28261 1.11056 0.86063 0.80936 0.79959 0.78438 1.19121 1.19803 1.18272 1.20811 0.95647 1.12699 0.96036 1.20376 0.91792 0.94565 0.97367 1.18611 0.85524 0.88290 0.86119 1.42038 1.12179 1.78295 1.03956 0.78291 0.83502 0.85073 0.90157 0.88054 0.88115 0.74134 0.75282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.60 18.54 41.83 0.78 -5.83 16 2 C 0.30 3.93 15.57 -22.48 -0.35 3.58 16 3 C -0.28 -3.52 6.00 -106.38 -0.64 -4.16 16 4 C 0.14 1.76 11.98 -16.95 -0.20 1.55 16 5 N -0.27 -4.22 8.46 30.89 0.26 -3.96 16 6 N -0.37 -6.22 3.64 -11.88 -0.04 -6.27 16 7 C 0.59 11.66 7.78 -12.52 -0.10 11.56 16 8 O -0.54 -10.50 14.58 5.34 0.08 -10.42 16 9 C -0.29 -6.21 5.89 -104.75 -0.62 -6.83 16 10 C -0.06 -1.29 9.22 -39.58 -0.37 -1.65 16 11 C -0.18 -4.24 8.60 -39.27 -0.34 -4.58 16 12 C 0.13 3.20 5.55 -106.80 -0.59 2.61 16 13 C -0.44 -10.36 9.04 -37.75 -0.34 -10.70 16 14 H 0.09 1.92 7.85 -52.48 -0.41 1.51 16 15 C 0.07 1.52 5.41 -17.30 -0.09 1.43 16 16 N -0.78 -17.98 10.60 55.56 0.59 -17.39 16 17 Si 0.92 16.77 29.56 -169.99 -5.03 11.74 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 21 C -0.23 -5.29 9.73 -39.27 -0.38 -5.67 16 22 C -0.02 -0.47 9.52 -39.58 -0.38 -0.85 16 23 C 0.45 6.28 7.93 -152.67 -1.21 5.07 16 24 N -0.82 -9.29 8.98 31.60 0.28 -9.00 16 25 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.15 2.97 4.52 -58.91 -0.27 2.71 16 27 H 0.13 3.21 6.14 -52.49 -0.32 2.89 16 28 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.10 2.04 7.65 -52.49 -0.40 1.64 16 31 H 0.42 5.09 6.67 -40.82 -0.27 4.82 16 32 H 0.42 3.59 8.68 -40.82 -0.35 3.23 16 LS Contribution 293.82 15.07 4.43 4.43 Total: -1.00 -26.87 293.82 -6.27 -33.13 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -2.01 Total: 12.20 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -5.61 Total: -8.64 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 1.87 Total: -42.45 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.87 -6.27 -33.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089486443.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.575 kcal (2) G-P(sol) polarization free energy of solvation -26.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds