Wall clock time and date at job start Tue Mar 31 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46503 * 109.45178 * 181.24494 * 12 11 10 14 14 C 1.34780 * 119.99987 * 84.78906 * 13 12 11 15 15 O 1.21605 * 119.99649 * 359.97438 * 14 13 12 16 16 C 1.47439 * 119.99825 * 180.02562 * 14 13 12 17 17 C 1.37984 * 124.15661 * 179.97438 * 16 14 13 18 18 S 1.72098 * 104.03632 * 179.97438 * 17 16 14 19 19 N 1.56401 * 96.15605 * 0.02562 * 18 17 16 20 20 N 1.27427 * 109.87442 * 359.74475 * 19 18 17 21 21 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 22 22 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 23 23 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 25 25 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 26 26 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 27 27 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 28 28 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 29 29 H 0.96995 * 119.99932 * 264.79244 * 13 12 11 30 30 H 1.08003 * 127.98103 * 359.95936 * 17 16 14 31 31 H 1.09002 * 109.49555 * 178.74703 * 21 12 11 32 32 H 1.08999 * 109.49562 * 58.65207 * 21 12 11 33 33 H 1.08996 * 109.59017 * 246.20330 * 22 9 7 34 34 H 1.09009 * 109.58200 * 6.48305 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0395 -5.6479 2.9302 14 6 -0.0054 -6.2701 3.5113 15 8 -1.1371 -6.0449 3.1274 16 6 0.2236 -7.2227 4.6130 17 6 -0.7806 -7.9055 5.2681 18 16 0.0535 -8.8556 6.4357 19 7 1.4897 -8.3692 6.0527 20 7 1.4225 -7.5327 5.0937 21 6 2.0674 -4.6174 0.9645 22 6 1.8137 -3.6528 -0.1983 23 1 -0.4850 0.8400 -0.0004 24 1 0.0993 -1.3344 1.6687 25 1 -0.6775 -2.6380 0.7360 26 1 1.3427 -2.9695 3.0019 27 1 -0.3882 -3.3843 3.0516 28 1 -0.0283 -5.0408 1.2304 29 1 1.9422 -5.8272 3.2366 30 1 -1.8446 -7.8551 5.0896 31 1 2.3041 -5.6063 0.5718 32 1 2.9024 -4.2538 1.5634 33 1 1.0401 -4.0603 -0.8491 34 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113385685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:02 Heat of formation + Delta-G solvation = 55.882792 kcal Electronic energy + Delta-G solvation = -19627.700034 eV Core-core repulsion = 16495.835517 eV Total energy + Delta-G solvation = -3131.864517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28590 -39.42504 -37.34052 -34.51457 -32.56467 -31.98178 -30.08646 -29.52573 -27.35516 -25.32425 -23.71655 -22.25697 -21.69293 -20.86049 -19.69993 -18.87058 -17.13615 -16.58811 -16.22544 -15.99504 -15.52134 -14.78837 -14.52526 -14.11865 -13.73307 -13.51422 -13.02129 -12.88554 -12.63344 -12.51042 -12.28654 -11.50620 -11.15261 -10.96732 -10.71366 -10.65568 -10.43919 -10.35118 -10.27067 -10.21395 -10.18525 -10.05219 -9.76946 -9.57680 -8.78759 -8.42923 -6.68440 -5.78185 -3.21382 -0.22846 0.62181 1.23528 1.25628 3.09569 3.14809 3.39498 3.45353 3.46461 3.64920 4.43996 4.50168 4.72885 5.08831 5.29566 5.40620 5.44953 5.60372 5.80901 6.06035 6.22499 6.27643 6.41287 6.57240 6.64964 6.75293 6.83412 6.92914 7.17588 7.36352 7.60292 7.68172 7.80014 8.16126 8.45558 9.21335 9.84477 10.41116 11.30443 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040357 B = 0.003366 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.635359 B = 8316.551375 C = 8373.943469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.148 4.148 12 C 0.149 3.851 13 N -0.701 5.701 14 C 0.598 3.402 15 O -0.525 6.525 16 C -0.017 4.017 17 C -0.236 4.236 18 S 0.452 5.548 19 N -0.291 5.291 20 N -0.210 5.210 21 C -0.139 4.139 22 C 0.149 3.851 23 H 0.255 0.745 24 H 0.090 0.910 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.405 0.595 30 H 0.209 0.791 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -17.849 11.951 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.350 5.350 14 C 0.378 3.622 15 O -0.400 6.400 16 C -0.165 4.165 17 C -0.393 4.393 18 S 0.588 5.412 19 N -0.271 5.271 20 N -0.081 5.081 21 C -0.179 4.179 22 C 0.022 3.978 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.240 0.760 30 H 0.226 0.774 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.255 -18.346 12.722 22.327 hybrid contribution -0.051 1.578 -0.780 1.761 sum -0.306 -16.768 11.942 20.589 Atomic orbital electron populations 1.70022 1.05265 1.25688 1.53592 1.25061 0.95284 0.98455 1.00747 0.86364 0.78903 0.83328 0.78118 1.20874 1.21634 1.21026 1.19137 0.92553 0.84794 1.42051 0.91652 1.44095 1.35901 1.01562 1.49956 1.20754 0.88726 0.98042 0.87714 1.22599 1.00617 0.94944 1.00631 1.21195 0.99169 0.88527 0.86457 1.46227 1.09269 1.43197 1.36342 1.16676 0.85550 0.79471 0.80485 1.90856 1.22160 1.64037 1.62939 1.22882 0.87788 1.03358 1.02452 1.28901 1.07787 1.01380 1.01226 1.81499 0.96995 1.34476 1.28266 1.78670 1.19759 1.14571 1.14110 1.71536 1.22778 1.08801 1.04989 1.22351 0.96569 0.99948 0.99066 1.20841 0.98098 0.86658 0.92227 0.93519 0.89205 0.96040 0.92471 0.92733 0.89662 0.75970 0.77399 0.92422 0.91609 0.96128 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.20 55.49 0.62 -25.63 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.98 9.58 -15.06 -0.14 -7.13 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.76 3.00 -172.31 -0.52 -15.28 16 10 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 11 C -0.15 -2.94 5.66 -26.59 -0.15 -3.09 16 12 C 0.15 2.61 2.41 -67.87 -0.16 2.44 16 13 N -0.70 -10.50 5.07 -54.82 -0.28 -10.78 16 14 C 0.60 9.15 7.77 -12.51 -0.10 9.06 16 15 O -0.52 -9.50 16.46 5.27 0.09 -9.42 16 16 C -0.02 -0.22 6.87 -83.78 -0.58 -0.79 16 17 C -0.24 -2.14 11.21 30.64 0.34 -1.79 16 18 S 0.45 3.16 23.38 -107.50 -2.51 0.65 16 19 N -0.29 -3.22 12.49 60.35 0.75 -2.46 16 20 N -0.21 -2.66 11.24 32.73 0.37 -2.30 16 21 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 22 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 23 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 29 H 0.41 5.38 8.19 -40.82 -0.33 5.05 16 30 H 0.21 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 1.18 7.93 -51.92 -0.41 0.77 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -31.89 302.39 -6.98 -38.87 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.96 Total: 1.72 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.06 Total: 3.44 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.95 Total: -56.44 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.51 Total: 0.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.89 -6.98 -38.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113385685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.753 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds