Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47286 * 2 1 4 4 C 1.50696 * 109.47317 * 120.00364 * 2 1 3 5 5 H 1.07994 * 120.00021 * 119.99720 * 4 2 1 6 6 C 1.37874 * 120.00035 * 299.99727 * 4 2 1 7 7 N 1.31522 * 120.00041 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00196 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46976 * 60.00070 * 8 6 4 10 10 H 1.48496 * 109.47521 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47239 * 300.00278 * 8 6 4 12 12 N 1.46506 * 109.46655 * 240.00383 * 2 1 3 13 13 C 1.34773 * 119.99970 * 84.99764 * 12 2 1 14 14 O 1.21552 * 120.00237 * 359.72662 * 13 12 2 15 15 C 1.47856 * 120.00033 * 179.97438 * 13 12 2 16 16 C 1.39572 * 120.12862 * 359.45220 * 15 13 12 17 17 C 1.38170 * 119.82206 * 179.76934 * 16 15 13 18 18 F 1.35097 * 119.95265 * 180.27519 * 17 16 15 19 19 C 1.38592 * 120.09204 * 0.50533 * 17 16 15 20 20 C 1.38296 * 120.26878 * 359.74803 * 19 17 16 21 21 N 1.48012 * 119.91304 * 180.02562 * 20 19 17 22 22 O 1.21804 * 120.00265 * 179.97438 * 21 20 19 23 23 O 1.21799 * 120.00328 * 359.97438 * 21 20 19 24 24 C 1.37988 * 120.17540 * 359.97438 * 20 19 17 25 25 H 1.09002 * 109.46796 * 299.99636 * 1 2 3 26 26 H 1.09000 * 109.47266 * 59.99106 * 1 2 3 27 27 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 28 28 H 0.96993 * 120.00032 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99501 * 264.99486 * 12 2 1 30 30 H 1.07996 * 120.08605 * 0.02562 * 16 15 13 31 31 H 1.08004 * 119.86736 * 179.76511 * 19 17 16 32 32 H 1.07999 * 120.04587 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1211 4.0080 10 1 1.8262 -0.4209 5.2204 11 1 1.8260 -2.5205 4.0076 12 7 2.0183 -0.6906 -1.1963 13 6 2.1469 -0.0182 -2.3572 14 8 1.8531 1.1600 -2.4130 15 6 2.6402 -0.7150 -3.5644 16 6 2.9842 -2.0662 -3.5019 17 6 3.4400 -2.7123 -4.6351 18 9 3.7684 -4.0215 -4.5789 19 6 3.5651 -2.0179 -5.8280 20 6 3.2303 -0.6777 -5.8929 21 7 3.3665 0.0561 -7.1711 22 8 3.0716 1.2364 -7.2302 23 8 3.7734 -0.5203 -8.1639 24 6 2.7686 -0.0229 -4.7694 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7083 1.1607 3.4844 29 1 2.2490 -1.6317 -1.1527 30 1 2.8905 -2.6062 -2.5714 31 1 3.9253 -2.5256 -6.7106 32 1 2.5073 1.0237 -4.8225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113702247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = -58.561184 kcal Electronic energy + Delta-G solvation = -21162.497788 eV Core-core repulsion = 17427.164681 eV Total energy + Delta-G solvation = -3735.333107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.52749 -42.43652 -40.23039 -38.34370 -36.80091 -35.13487 -33.12578 -32.14035 -31.38713 -29.06817 -26.95809 -25.43904 -24.61961 -22.91907 -21.57621 -20.26437 -19.46800 -18.96095 -17.79493 -17.70884 -16.94843 -16.87345 -16.63099 -16.22459 -15.70723 -15.35360 -14.60018 -14.52471 -13.88589 -13.47201 -12.95416 -12.82470 -12.59478 -12.49359 -11.89381 -11.78987 -11.48994 -11.34971 -11.25583 -11.09670 -10.94041 -10.49676 -10.37936 -10.07706 -9.62994 -9.56650 -9.24260 -8.72312 -8.24132 -6.26467 -4.37478 -0.58324 0.15625 0.91227 1.00973 2.40647 3.16599 3.22008 3.23191 3.36729 3.42292 3.49225 4.03279 4.11372 4.19618 4.31102 4.35836 4.77896 5.02502 5.06393 5.13379 5.34240 5.52896 5.78226 6.10016 6.63753 6.74910 6.93950 7.12671 7.29690 7.38017 7.50292 7.70559 7.96576 8.29986 8.51279 8.74114 9.30264 10.79399 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.003897 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.403411 B = 7182.820857 C = 8000.742812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.054 0.946 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.693 5.693 13 C 0.542 3.458 14 O -0.532 6.532 15 C -0.085 4.085 16 C -0.075 4.075 17 C 0.104 3.896 18 F -0.119 7.119 19 C -0.082 4.082 20 C -0.024 4.024 21 N 0.029 4.971 22 O -0.143 6.143 23 O -0.156 6.156 24 C -0.013 4.013 25 H 0.094 0.906 26 H 0.016 0.984 27 H 0.028 0.972 28 H 0.267 0.733 29 H 0.389 0.611 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -7.704 -13.069 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.072 0.928 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.340 5.340 13 C 0.325 3.675 14 O -0.410 6.410 15 C -0.089 4.089 16 C -0.094 4.094 17 C 0.084 3.916 18 F -0.097 7.097 19 C -0.103 4.103 20 C -0.107 4.107 21 N 0.550 4.450 22 O -0.362 6.362 23 O -0.372 6.372 24 C -0.033 4.033 25 H 0.112 0.888 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.223 0.777 30 H 0.180 0.820 31 H 0.186 0.814 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.730 -7.142 -12.267 14.677 hybrid contribution 0.540 -1.098 0.525 1.331 sum 4.271 -8.239 -11.743 14.967 Atomic orbital electron populations 1.22101 0.97958 0.99394 1.01273 1.18910 0.91346 0.94151 0.79320 0.92811 1.21113 1.33115 1.13534 0.90156 0.92005 1.24876 0.94625 0.94889 0.99109 1.69877 1.35344 1.22236 1.24303 0.86471 0.79205 0.79580 0.81651 1.20092 1.21004 1.20086 1.46576 1.63640 1.13598 1.10221 1.17793 0.79906 0.86902 0.82872 1.90809 1.50681 1.15069 1.84484 1.20221 1.00537 0.92952 0.95221 1.21914 0.94152 0.94424 0.98940 1.17018 1.01803 0.79447 0.93308 1.91607 1.90071 1.31189 1.96814 1.20975 0.97692 0.92166 0.99416 1.20606 1.11832 0.92803 0.85474 1.43433 0.98163 1.01167 1.02192 1.94603 1.51863 0.98391 1.91306 1.94543 1.47167 1.70120 1.25344 1.21225 0.90747 1.02754 0.88573 0.88787 0.96441 0.95256 0.92284 0.77708 0.81978 0.81427 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.26 37.16 0.34 -3.09 16 2 C 0.26 6.18 2.56 -69.08 -0.18 6.00 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.33 8.73 -34.44 -0.30 -13.63 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.58 11.32 55.43 0.63 -22.95 16 8 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 N -0.69 -12.72 5.02 -55.87 -0.28 -13.00 16 13 C 0.54 9.57 7.74 -12.33 -0.10 9.48 16 14 O -0.53 -11.47 16.01 5.32 0.09 -11.38 16 15 C -0.08 -1.11 5.87 -104.97 -0.62 -1.72 16 16 C -0.07 -0.76 9.52 -39.11 -0.37 -1.13 16 17 C 0.10 0.98 7.29 -39.48 -0.29 0.69 16 18 F -0.12 -1.11 17.26 2.25 0.04 -1.07 16 19 C -0.08 -0.78 9.53 -39.43 -0.38 -1.15 16 20 C -0.02 -0.28 6.84 -80.02 -0.55 -0.83 16 21 N 0.03 0.37 4.45 33.93 0.15 0.52 16 22 O -0.14 -2.02 18.44 -29.46 -0.54 -2.57 16 23 O -0.16 -2.02 18.44 -29.46 -0.54 -2.56 16 24 C -0.01 -0.16 9.10 -39.18 -0.36 -0.52 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.39 5.86 6.57 -40.82 -0.27 5.59 16 30 H 0.16 1.37 6.41 -52.49 -0.34 1.03 16 31 H 0.17 1.27 7.60 -52.48 -0.40 0.87 16 32 H 0.17 2.29 7.19 -52.49 -0.38 1.92 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -28.43 297.29 -6.36 -34.79 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -2.48 Total: 3.43 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.88 Total: -4.24 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.50 Total: -35.43 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -1.00 Total: -16.52 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.43 -6.36 -34.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113702247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.772 kcal (2) G-P(sol) polarization free energy of solvation -28.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds