Wall clock time and date at job start Tue Mar 31 2020 06:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38295 * 119.95145 * 2 1 4 4 C 1.38267 * 120.14563 * 180.27675 * 3 2 1 5 5 C 1.38221 * 120.05748 * 359.44670 * 4 3 2 6 6 Cl 1.73598 * 120.04769 * 180.25590 * 5 4 3 7 7 C 1.38949 * 119.90819 * 0.27365 * 5 4 3 8 8 N 1.40008 * 120.07245 * 180.02562 * 7 5 4 9 9 C 1.34776 * 119.99455 * 145.28544 * 8 7 5 10 10 O 1.21584 * 120.00451 * 4.45470 * 9 8 7 11 11 N 1.34785 * 119.99856 * 184.46060 * 9 8 7 12 12 C 1.46497 * 119.99755 * 359.97438 * 11 9 8 13 13 C 1.46496 * 120.00111 * 180.02562 * 11 9 8 14 14 C 1.50706 * 109.47255 * 89.99567 * 13 11 9 15 15 H 1.07998 * 119.99875 * 0.02562 * 14 13 11 16 16 C 1.37878 * 120.00058 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99587 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47158 * 90.00406 * 18 16 14 20 20 H 1.48496 * 109.47462 * 210.00204 * 18 16 14 21 21 H 1.48504 * 109.47442 * 330.00541 * 18 16 14 22 22 C 1.38119 * 119.95739 * 179.72139 * 2 1 3 23 23 H 1.09002 * 109.47153 * 270.27783 * 1 2 3 24 24 H 1.08998 * 109.47131 * 30.27780 * 1 2 3 25 25 H 1.09005 * 109.47202 * 150.27724 * 1 2 3 26 26 H 1.08006 * 119.93051 * 359.97438 * 3 2 1 27 27 H 1.08007 * 119.96691 * 179.72303 * 4 3 2 28 28 H 0.96996 * 120.00005 * 325.28232 * 8 7 5 29 29 H 1.08997 * 109.47021 * 90.00183 * 12 11 9 30 30 H 1.09000 * 109.47374 * 210.00639 * 12 11 9 31 31 H 1.09009 * 109.47507 * 330.00159 * 12 11 9 32 32 H 1.08999 * 109.46886 * 209.99855 * 13 11 9 33 33 H 1.08996 * 109.46972 * 329.99894 * 13 11 9 34 34 H 0.97005 * 119.99735 * 179.97438 * 17 16 14 35 35 H 1.07995 * 120.02828 * 0.02680 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1983 0.0000 4 6 3.5801 1.2029 -0.0058 5 6 4.2765 0.0090 0.0000 6 17 6.0124 0.0152 -0.0006 7 6 3.5851 -1.1963 0.0058 8 7 4.2870 -2.4077 0.0122 9 6 3.7944 -3.4683 0.6822 10 8 2.7027 -3.3986 1.2129 11 7 4.5120 -4.6063 0.7639 12 6 5.8271 -4.6905 0.1240 13 6 3.9763 -5.7594 1.4916 14 6 3.1827 -6.6250 0.5471 15 1 3.0873 -6.3445 -0.4915 16 6 2.5793 -7.7757 1.0086 17 7 2.6960 -8.1175 2.2732 18 14 1.5963 -8.8490 -0.1622 19 1 2.4924 -9.8617 -0.7759 20 1 0.5132 -9.5354 0.5866 21 1 1.0018 -8.0031 -1.2283 22 6 2.1967 -1.1966 0.0058 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6555 2.1325 -0.0004 27 1 4.1164 2.1404 -0.0103 28 1 5.1278 -2.4836 -0.4655 29 1 6.5950 -4.3709 0.8284 30 1 6.0183 -5.7197 -0.1797 31 1 5.8466 -4.0434 -0.7531 32 1 4.7990 -6.3385 1.9109 33 1 3.3290 -5.4121 2.2968 34 1 2.2712 -8.9268 2.5980 35 1 1.6565 -2.1318 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120909756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:04 Heat of formation + Delta-G solvation = -6.432018 kcal Electronic energy + Delta-G solvation = -19661.285103 eV Core-core repulsion = 16492.381955 eV Total energy + Delta-G solvation = -3168.903147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37021 -38.67730 -36.52351 -35.14786 -34.52454 -32.61860 -32.16157 -29.65251 -27.69273 -26.79303 -25.82240 -23.55077 -22.34247 -21.21895 -19.50128 -17.79798 -16.88482 -16.61266 -16.30486 -15.53710 -15.03495 -14.62683 -14.07838 -13.93416 -13.80768 -13.49850 -13.16047 -12.94664 -12.63011 -12.44333 -12.22008 -11.95867 -11.71184 -11.45175 -11.23236 -11.17730 -10.93105 -10.92158 -10.59076 -10.19070 -10.09741 -9.67172 -9.30588 -8.56421 -8.45129 -8.04728 -7.63305 -6.05829 -4.10760 1.17225 1.38694 2.12874 3.10580 3.29117 3.35966 3.40575 3.55134 3.93362 4.35626 4.49339 4.78495 4.90394 5.19508 5.22587 5.28441 5.44604 5.51165 5.62500 5.65837 5.83798 5.92696 6.02372 6.09794 6.17659 6.28802 6.52137 6.71426 6.74004 7.09635 7.31282 7.46065 7.61292 7.91492 8.20560 8.50883 8.89497 9.16789 9.54546 11.02075 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.004815 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.357056 B = 5813.262189 C = 6855.445900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.090 4.090 5 C -0.081 4.081 6 Cl -0.076 7.076 7 C 0.197 3.803 8 N -0.693 5.693 9 C 0.699 3.301 10 O -0.567 6.567 11 N -0.610 5.610 12 C 0.083 3.917 13 C 0.259 3.741 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.112 4.112 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.404 0.596 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 17.386 -6.168 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.157 4.157 4 C -0.109 4.109 5 C -0.111 4.111 6 Cl -0.047 7.047 7 C 0.098 3.902 8 N -0.343 5.343 9 C 0.401 3.599 10 O -0.443 6.443 11 N -0.344 5.344 12 C -0.061 4.061 13 C 0.140 3.860 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.133 4.133 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.242 0.758 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.070 17.119 -5.590 18.268 hybrid contribution 0.267 -0.749 -0.856 1.168 sum 3.337 16.369 -6.446 17.907 Atomic orbital electron populations 1.20799 0.90684 1.02819 1.02741 1.19930 0.96526 0.92440 0.97424 1.20876 0.93105 0.97808 1.03937 1.20743 0.94113 0.95935 1.00093 1.20704 0.84007 0.93955 1.12388 1.98338 1.10314 1.98795 1.97278 1.17289 0.91175 0.83626 0.98065 1.43018 1.26684 1.09708 1.54920 1.15884 0.84405 0.79969 0.79648 1.90879 1.19849 1.82089 1.51452 1.47505 1.17920 1.13100 1.55923 1.21612 0.85150 1.03259 0.96114 1.19278 0.94485 0.80267 0.91959 1.21444 1.32341 1.06847 0.96024 0.92468 1.24924 0.96276 0.97599 0.95240 1.69933 1.44464 1.25113 1.13812 0.86490 0.79796 0.80280 0.80797 1.20654 1.21066 1.19930 1.21378 0.91803 0.99734 1.00397 0.90752 0.91552 0.91104 0.85439 0.85015 0.75824 0.93474 0.90107 0.93256 0.94673 0.93580 0.92679 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.00 0.36 -0.86 16 2 C -0.06 -0.82 5.88 -104.65 -0.62 -1.44 16 3 C -0.14 -1.56 9.70 -39.55 -0.38 -1.94 16 4 C -0.09 -1.04 9.82 -39.58 -0.39 -1.43 16 5 C -0.08 -1.11 6.34 -39.32 -0.25 -1.36 16 6 Cl -0.08 -0.93 27.96 -51.86 -1.45 -2.38 16 7 C 0.20 3.19 6.31 -83.63 -0.53 2.66 16 8 N -0.69 -11.84 4.93 -14.19 -0.07 -11.91 16 9 C 0.70 15.05 8.12 -86.91 -0.71 14.34 16 10 O -0.57 -14.26 13.34 5.29 0.07 -14.19 16 11 N -0.61 -13.07 2.86 -188.74 -0.54 -13.61 16 12 C 0.08 1.32 10.24 59.85 0.61 1.93 16 13 C 0.26 6.76 5.16 -5.19 -0.03 6.73 16 14 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.11 -1.86 8.35 -39.40 -0.33 -2.18 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 27 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 28 H 0.40 5.86 5.77 -40.82 -0.24 5.62 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.05 0.65 6.30 -51.92 -0.33 0.32 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.15 2.96 6.20 -52.49 -0.33 2.64 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -32.17 314.52 -8.39 -40.57 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.19 Total: 2.79 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.67 Total: 2.95 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.13 Total: -51.17 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.07 Total: -14.19 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.45 Total: -2.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.17 -8.39 -40.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120909756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.134 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds