Wall clock time and date at job start Tue Mar 31 2020 05:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33314 * 122.55196 * 2 1 4 4 S 1.75852 * 109.74491 * 180.02562 * 3 2 1 5 5 C 1.75859 * 91.06090 * 359.82505 * 4 3 2 6 6 C 1.33951 * 109.58569 * 0.30511 * 5 4 3 7 7 N 1.40386 * 122.64730 * 179.90457 * 6 5 4 8 8 C 1.34776 * 120.00072 * 7.55540 * 7 6 5 9 9 O 1.21418 * 119.99555 * 5.49609 * 8 7 6 10 10 C 1.49294 * 120.00147 * 185.49178 * 8 7 6 11 11 O 1.21368 * 119.99807 * 0.02562 * 10 8 7 12 12 N 1.34776 * 120.00147 * 180.02562 * 10 8 7 13 13 C 1.46498 * 119.99974 * 179.97438 * 12 10 8 14 14 H 1.09004 * 109.47114 * 35.00904 * 13 12 10 15 15 C 1.52992 * 109.47409 * 275.00140 * 13 12 10 16 16 C 1.50700 * 109.46808 * 155.00194 * 13 12 10 17 17 H 1.08005 * 120.00050 * 5.52316 * 16 13 12 18 18 C 1.37875 * 120.00046 * 185.52329 * 16 13 12 19 19 N 1.31522 * 120.00278 * 197.59142 * 18 16 13 20 20 Si 1.86802 * 120.00001 * 17.86767 * 18 16 13 21 21 H 1.48504 * 109.47122 * 179.72101 * 20 18 16 22 22 H 1.48496 * 109.47074 * 299.72642 * 20 18 16 23 23 H 1.48497 * 109.46931 * 59.72629 * 20 18 16 24 24 H 1.08998 * 109.47091 * 269.98581 * 1 2 3 25 25 H 1.09003 * 109.46909 * 29.98036 * 1 2 3 26 26 H 1.08991 * 109.47095 * 149.97948 * 1 2 3 27 27 H 1.07999 * 125.12768 * 0.03435 * 3 2 1 28 28 H 1.08006 * 125.21155 * 180.18269 * 5 4 3 29 29 H 0.97003 * 119.99965 * 187.56050 * 7 6 5 30 30 H 0.97004 * 119.99893 * 0.02562 * 12 10 8 31 31 H 1.08998 * 109.47625 * 306.24052 * 15 13 12 32 32 H 1.09000 * 109.47186 * 66.24104 * 15 13 12 33 33 H 1.09005 * 109.47053 * 186.23707 * 15 13 12 34 34 H 0.97005 * 119.99549 * 354.99635 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2243 1.1237 0.0000 4 16 3.9391 0.7339 -0.0007 5 6 3.5811 -0.9879 0.0043 6 6 2.2541 -1.1706 -0.0005 7 7 1.6651 -2.4449 0.0000 8 6 2.4320 -3.5417 0.1588 9 8 3.6161 -3.4247 0.4010 10 6 1.8258 -4.9006 0.0371 11 8 0.6423 -5.0175 -0.2053 12 7 2.5926 -5.9974 0.1965 13 6 1.9975 -7.3308 0.0776 14 1 1.2177 -7.3141 -0.6838 15 6 1.3901 -7.7398 1.4209 16 6 3.0619 -8.3227 -0.3152 17 1 4.0945 -8.0115 -0.3747 18 6 2.7176 -9.6273 -0.5986 19 7 3.6397 -10.5652 -0.6008 20 14 0.9428 -10.0616 -0.9872 21 1 0.8380 -11.5174 -1.2610 22 1 0.0827 -9.7126 0.1719 23 1 0.4970 -9.3001 -2.1815 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5141 27 1 1.8142 2.1228 0.0005 28 1 4.3183 -1.7772 0.0085 29 1 0.7061 -2.5360 -0.1141 30 1 3.5384 -5.9039 0.3907 31 1 2.1438 -7.6498 2.2031 32 1 0.5472 -7.0885 1.6519 33 1 1.0463 -8.7727 1.3647 34 1 4.5721 -10.3289 -0.4749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122984447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:56 Heat of formation + Delta-G solvation = -33.748203 kcal Electronic energy + Delta-G solvation = -19383.345661 eV Core-core repulsion = 16215.301701 eV Total energy + Delta-G solvation = -3168.043960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95040 -39.04646 -37.73388 -35.39816 -34.03956 -32.50571 -30.85987 -29.89716 -27.61618 -25.28542 -24.76139 -23.07689 -20.73349 -19.90311 -19.63960 -18.59806 -17.75284 -16.90225 -16.47942 -15.78134 -15.59866 -15.03422 -14.39617 -14.36850 -14.06284 -13.60740 -13.40043 -13.18448 -12.79386 -12.49474 -12.44308 -12.26990 -12.24076 -11.86952 -11.54428 -11.26076 -10.97202 -10.69243 -10.56332 -10.12529 -9.86721 -9.26843 -9.18601 -8.76289 -8.48194 -8.38794 -8.02290 -6.66021 -4.29869 0.81790 1.45116 1.52340 1.80178 2.55189 2.64198 3.32523 3.39279 3.51619 3.54373 3.94926 4.35472 4.61151 4.78487 4.82923 5.07243 5.09962 5.32065 5.39813 5.58959 5.66119 5.87980 6.00576 6.24747 6.40553 6.43664 6.52165 6.76791 6.91815 7.13940 7.19407 7.45892 7.70897 8.13561 8.21591 8.42367 8.72434 9.39531 10.75420 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.036020 B = 0.003626 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.156357 B = 7719.769742 C = 8253.865626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.114 4.114 3 C -0.207 4.207 4 S 0.105 5.895 5 C -0.237 4.237 6 C 0.123 3.877 7 N -0.628 5.628 8 C 0.507 3.493 9 O -0.502 6.502 10 C 0.498 3.502 11 O -0.537 6.537 12 N -0.660 5.660 13 C 0.239 3.761 14 H 0.046 0.954 15 C -0.162 4.162 16 C -0.622 4.622 17 H 0.065 0.935 18 C 0.041 3.959 19 N -0.893 5.893 20 Si 1.042 2.958 21 H -0.282 1.282 22 H -0.271 1.271 23 H -0.279 1.279 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.168 0.832 28 H 0.199 0.801 29 H 0.422 0.578 30 H 0.407 0.593 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 21.940 1.785 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C -0.343 4.343 4 S 0.367 5.633 5 C -0.375 4.375 6 C 0.018 3.982 7 N -0.274 5.274 8 C 0.290 3.710 9 O -0.376 6.376 10 C 0.276 3.724 11 O -0.416 6.416 12 N -0.309 5.309 13 C 0.137 3.863 14 H 0.064 0.936 15 C -0.220 4.220 16 C -0.660 4.660 17 H 0.083 0.917 18 C -0.167 4.167 19 N -0.526 5.526 20 Si 0.869 3.131 21 H -0.207 1.207 22 H -0.197 1.197 23 H -0.205 1.205 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.185 0.815 28 H 0.215 0.785 29 H 0.261 0.739 30 H 0.242 0.758 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.259 21.373 1.436 21.841 hybrid contribution -0.115 0.563 0.361 0.678 sum -4.373 21.936 1.797 22.440 Atomic orbital electron populations 1.20530 0.89301 1.03093 1.02754 1.18572 0.97539 0.90754 1.05976 1.25216 0.96452 1.01829 1.10770 1.84249 1.05424 1.00155 1.73437 1.26301 0.99252 0.99614 1.12326 1.16650 0.91565 0.84651 1.05335 1.43063 1.12400 1.02848 1.69067 1.20819 0.86608 0.86393 0.77228 1.90583 1.15677 1.86369 1.45015 1.19648 0.87178 0.85106 0.80450 1.90724 1.15042 1.86672 1.49118 1.46248 1.13033 1.06021 1.65582 1.19241 0.95341 0.77572 0.94164 0.93589 1.22515 0.99019 1.01304 0.99205 1.22055 0.94091 0.96097 1.53778 0.91721 1.25709 1.06394 0.91763 0.92799 1.70876 1.02755 1.33889 1.45041 0.84081 0.74705 0.76565 0.77732 1.20713 1.19688 1.20520 0.90760 0.90867 0.91480 0.81476 0.78490 0.73915 0.75768 0.93353 0.94983 0.91427 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.86 36.01 0.36 -0.39 16 2 C -0.11 -1.18 5.81 -106.11 -0.62 -1.79 16 3 C -0.21 -1.89 10.96 29.01 0.32 -1.58 16 4 S 0.10 1.07 23.33 -107.50 -2.51 -1.44 16 5 C -0.24 -3.16 9.99 29.23 0.29 -2.87 16 6 C 0.12 1.60 6.54 -85.21 -0.56 1.04 16 7 N -0.63 -8.62 5.39 -11.30 -0.06 -8.68 16 8 C 0.51 8.37 7.81 -11.66 -0.09 8.28 16 9 O -0.50 -8.82 13.35 5.44 0.07 -8.75 16 10 C 0.50 9.47 7.85 -11.66 -0.09 9.38 16 11 O -0.54 -10.98 16.15 5.48 0.09 -10.89 16 12 N -0.66 -13.62 5.06 -55.42 -0.28 -13.90 16 13 C 0.24 5.63 2.14 -69.09 -0.15 5.48 16 14 H 0.05 1.14 6.23 -51.93 -0.32 0.82 16 15 C -0.16 -3.54 9.16 37.15 0.34 -3.20 16 16 C -0.62 -16.65 9.00 -34.44 -0.31 -16.96 16 17 H 0.06 1.83 7.96 -52.48 -0.42 1.41 16 18 C 0.04 1.12 5.29 -17.82 -0.09 1.03 16 19 N -0.89 -26.23 13.70 55.43 0.76 -25.47 16 20 Si 1.04 24.30 26.30 -169.99 -4.47 19.83 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -5.84 5.78 56.52 0.33 -5.52 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 26 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 27 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.20 2.96 5.44 -52.48 -0.29 2.67 16 29 H 0.42 5.09 6.76 -40.82 -0.28 4.82 16 30 H 0.41 8.02 7.99 -40.82 -0.33 7.69 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.51 4.90 -51.93 -0.25 1.25 16 34 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -30.01 303.21 -6.02 -36.02 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.58 Total: 10.29 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.60 Total: -1.59 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.42 Total: -48.05 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.16 Total: -19.64 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.47 Total: 19.83 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.51 Total: -1.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.01 -6.02 -36.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122984447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.274 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds