Wall clock time and date at job start Tue Mar 31 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46505 * 109.47228 * 2 1 4 4 C 1.33323 * 119.99680 * 88.57952 * 3 2 1 5 5 H 1.07998 * 119.99900 * 166.81594 * 4 3 2 6 6 C 1.46789 * 119.99994 * 346.53718 * 4 3 2 7 7 N 1.29323 * 119.99847 * 2.15037 * 6 4 3 8 8 Si 1.86796 * 120.00140 * 182.15067 * 6 4 3 9 9 H 1.48497 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47396 * 119.99813 * 8 6 4 11 11 H 1.48496 * 109.47231 * 240.00011 * 8 6 4 12 12 C 1.34771 * 120.00489 * 268.57746 * 3 2 1 13 13 O 1.21490 * 120.00187 * 175.31122 * 12 3 2 14 14 C 1.47565 * 119.99744 * 355.30740 * 12 3 2 15 15 C 1.39770 * 120.12659 * 300.47452 * 14 12 3 16 16 C 1.37783 * 119.87197 * 180.02562 * 15 14 12 17 17 C 1.38710 * 120.12729 * 0.02562 * 16 15 14 18 18 F 1.35094 * 119.87275 * 179.97438 * 17 16 15 19 19 C 1.38670 * 120.25187 * 0.02562 * 17 16 15 20 20 C 1.37822 * 120.12775 * 359.68145 * 19 17 16 21 21 N 1.48015 * 120.06567 * 180.29750 * 20 19 17 22 22 O 1.31705 * 119.99801 * 3.68394 * 21 20 19 23 23 O 1.31704 * 120.00356 * 183.68386 * 21 20 19 24 24 H 1.09005 * 109.47494 * 59.99220 * 1 2 3 25 25 H 1.08994 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47115 * 299.99624 * 1 2 3 27 27 H 1.09005 * 109.47115 * 240.00376 * 2 1 3 28 28 H 1.08998 * 109.47793 * 120.00557 * 2 1 3 29 29 H 0.97005 * 119.99563 * 180.02562 * 7 6 4 30 30 H 1.08000 * 120.06514 * 0.02799 * 15 14 12 31 31 H 1.07994 * 119.93743 * 180.02562 * 16 15 14 32 32 H 1.08003 * 119.93579 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2135 2.0192 1.1543 5 1 2.7672 2.9463 1.1719 6 6 1.6707 1.4647 2.4003 7 7 1.0389 0.3364 2.3846 8 14 1.8923 2.3888 4.0085 9 1 2.6453 3.6440 3.7583 10 1 0.5608 2.7152 4.5795 11 1 2.6474 1.5416 4.9662 12 6 2.2703 2.0070 -1.1667 13 8 2.5932 3.1782 -1.1706 14 6 2.1540 1.2695 -2.4396 15 6 2.9407 0.1373 -2.6687 16 6 2.8283 -0.5471 -3.8593 17 6 1.9368 -0.1140 -4.8297 18 9 1.8310 -0.7885 -5.9954 19 6 1.1544 1.0093 -4.6083 20 6 1.2541 1.6982 -3.4188 21 7 0.4136 2.8932 -3.1812 22 8 -0.4818 3.2570 -4.0760 23 8 0.5611 3.5928 -2.0752 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.6799 -0.0299 3.2080 30 1 3.6355 -0.2006 -1.9140 31 1 3.4354 -1.4223 -4.0373 32 1 0.4623 1.3423 -5.3676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125425843.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:24 Heat of formation + Delta-G solvation = 6.070374 kcal Electronic energy + Delta-G solvation = -22673.879005 eV Core-core repulsion = 18941.348532 eV Total energy + Delta-G solvation = -3732.530473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.89490 -40.07078 -38.25617 -37.09432 -35.52467 -33.21697 -32.77172 -31.41539 -30.70748 -29.89903 -26.34614 -25.25005 -23.40470 -22.37146 -22.04396 -20.05031 -18.25808 -17.56045 -17.32962 -16.91923 -15.97843 -15.79457 -15.66769 -15.53602 -14.85348 -14.50055 -14.27180 -14.07410 -13.67541 -13.27247 -13.08734 -12.53677 -12.23022 -12.15371 -11.76496 -11.59346 -11.48399 -11.21454 -10.74400 -10.67807 -10.48744 -10.19780 -9.89515 -9.64020 -9.45438 -9.27321 -8.81378 -8.58746 -8.41416 -7.20222 -3.94997 -0.25481 0.95282 1.61573 2.09229 2.72428 2.86620 2.92889 3.25414 3.54532 3.69435 4.16568 4.25510 4.46203 4.71512 4.84997 5.03911 5.21659 5.38124 5.78092 5.82456 5.88129 5.99982 6.14495 6.25517 6.29083 6.41914 6.49901 6.55397 6.90405 6.93571 7.17496 7.37251 7.75457 7.88431 8.49794 8.72491 9.53352 9.69571 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.006150 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.353668 B = 4551.765014 C = 5109.157442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.094 3.906 3 N -0.381 5.381 4 C -0.235 4.235 5 H 0.130 0.870 6 C 0.023 3.977 7 N -0.781 5.781 8 Si 0.948 3.052 9 H -0.254 1.254 10 H -0.269 1.269 11 H -0.271 1.271 12 C 0.434 3.566 13 O -0.547 6.547 14 C -0.051 4.051 15 C -0.071 4.071 16 C -0.125 4.125 17 C 0.081 3.919 18 F -0.134 7.134 19 C -0.096 4.096 20 C 0.036 3.964 21 N -0.016 5.016 22 O -0.296 6.296 23 O -0.143 6.143 24 H 0.023 0.977 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.121 0.879 29 H 0.291 0.709 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -8.251 -1.743 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.369 4.369 5 H 0.147 0.853 6 C -0.193 4.193 7 N -0.416 5.416 8 Si 0.771 3.229 9 H -0.177 1.177 10 H -0.194 1.194 11 H -0.196 1.196 12 C 0.227 3.773 13 O -0.431 6.431 14 C -0.059 4.059 15 C -0.091 4.091 16 C -0.145 4.145 17 C 0.060 3.940 18 F -0.113 7.113 19 C -0.116 4.116 20 C -0.057 4.057 21 N 0.425 4.575 22 O -0.447 6.447 23 O -0.330 6.330 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.138 0.862 29 H 0.105 0.895 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.182 -8.175 -1.971 8.992 hybrid contribution -0.496 0.324 0.329 0.678 sum 2.686 -7.851 -1.642 8.459 Atomic orbital electron populations 1.22063 0.95844 1.00498 1.01619 1.22157 0.95514 0.82701 1.02538 1.43446 1.49147 1.11545 1.05216 1.21681 1.25679 1.07259 0.82275 0.85283 1.27369 0.94314 0.96145 1.01501 1.69141 1.25518 1.16121 1.30793 0.85464 0.79430 0.80189 0.77847 1.17682 1.19422 1.19623 1.17259 0.90797 0.87050 0.82151 1.90684 1.52612 1.15020 1.84744 1.19923 0.94843 0.95365 0.95803 1.21099 0.98279 0.92750 0.96936 1.21203 0.98800 1.01284 0.93236 1.17177 1.00105 0.93125 0.83640 1.91500 1.95361 1.78825 1.45620 1.20610 0.99995 0.94080 0.96961 1.19581 0.98006 0.90687 0.97425 1.49847 1.02179 1.02558 1.02908 1.96136 1.31184 1.77296 1.40099 1.96366 1.73887 1.51969 1.10754 0.95814 0.93409 0.89674 0.93194 0.86155 0.89540 0.83177 0.83575 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.55 37.15 0.35 -2.42 16 2 C 0.09 1.80 5.21 -4.04 -0.02 1.78 16 3 N -0.38 -8.57 2.53 -114.43 -0.29 -8.86 16 4 C -0.23 -5.42 9.66 -13.45 -0.13 -5.55 16 5 H 0.13 3.14 7.31 -52.49 -0.38 2.76 16 6 C 0.02 0.48 5.49 -15.15 -0.08 0.39 16 7 N -0.78 -15.37 7.49 56.00 0.42 -14.95 16 8 Si 0.95 16.21 29.65 -169.99 -5.04 11.17 16 9 H -0.25 -4.50 7.11 56.52 0.40 -4.10 16 10 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 11 H -0.27 -4.46 7.11 56.52 0.40 -4.06 16 12 C 0.43 10.36 5.58 -12.46 -0.07 10.29 16 13 O -0.55 -15.17 14.20 -18.98 -0.27 -15.44 16 14 C -0.05 -1.04 4.80 -104.96 -0.50 -1.54 16 15 C -0.07 -1.10 7.60 -39.18 -0.30 -1.40 16 16 C -0.13 -1.64 10.01 -39.57 -0.40 -2.03 16 17 C 0.08 1.19 7.31 -39.25 -0.29 0.91 16 18 F -0.13 -1.87 17.26 2.25 0.04 -1.83 16 19 C -0.10 -1.68 9.55 -39.57 -0.38 -2.05 16 20 C 0.04 0.77 6.91 -79.54 -0.55 0.22 16 21 N -0.02 -0.40 4.98 34.16 0.17 -0.23 16 22 O -0.30 -7.36 19.16 -31.57 -0.60 -7.96 16 23 O -0.14 -3.98 15.50 -39.94 -0.62 -4.60 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.81 6.10 -51.93 -0.32 1.50 16 27 H 0.05 0.84 4.77 -51.93 -0.25 0.59 16 28 H 0.12 2.32 5.82 -51.93 -0.30 2.02 16 29 H 0.29 5.19 8.26 -40.82 -0.34 4.85 16 30 H 0.15 1.98 7.77 -52.49 -0.41 1.57 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.16 2.55 7.58 -52.48 -0.40 2.15 16 LS Contribution 285.72 15.07 4.31 4.31 Total: -1.00 -28.68 285.72 -6.71 -35.39 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -2.46 Total: 4.42 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.36 Total: -1.41 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.30 Total: -24.04 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -1.49 Total: -28.00 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 16.21 SS G_CDS: -5.04 Total: 11.17 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.68 -6.71 -35.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125425843.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.461 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds