Wall clock time and date at job start Tue Mar 31 2020 06:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38131 * 119.54209 * 2 1 4 4 C 1.39836 * 119.02981 * 180.02562 * 3 2 1 5 5 C 1.48152 * 120.91206 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99978 * 215.60912 * 5 4 3 7 7 N 1.34777 * 120.00161 * 35.61027 * 5 4 3 8 8 C 1.46505 * 119.99843 * 356.34190 * 7 5 4 9 9 C 1.46492 * 120.00109 * 176.33720 * 7 5 4 10 10 H 1.08999 * 109.47210 * 0.02562 * 9 7 5 11 11 C 1.52998 * 109.47216 * 120.00271 * 9 7 5 12 12 C 1.50705 * 109.47133 * 240.00312 * 9 7 5 13 13 H 1.07994 * 119.99823 * 359.97438 * 12 9 7 14 14 C 1.37879 * 119.99763 * 180.02562 * 12 9 7 15 15 N 1.31519 * 120.00338 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99603 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.46840 * 269.99635 * 16 14 12 18 18 H 1.48492 * 109.47306 * 29.99731 * 16 14 12 19 19 H 1.48500 * 109.46921 * 150.00040 * 16 14 12 20 20 C 1.39783 * 118.17084 * 0.25455 * 4 3 2 21 21 C 1.38310 * 118.98720 * 359.50004 * 20 4 3 22 22 Cl 1.73599 * 119.56347 * 180.22504 * 21 20 4 23 23 N 1.31823 * 119.54019 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47069 * 89.99944 * 1 2 3 25 25 H 1.09000 * 109.46908 * 210.00006 * 1 2 3 26 26 H 1.08996 * 109.46932 * 329.99758 * 1 2 3 27 27 H 1.07997 * 120.48573 * 0.05025 * 3 2 1 28 28 H 1.09005 * 109.46677 * 275.35000 * 8 7 5 29 29 H 1.09001 * 109.47254 * 35.35111 * 8 7 5 30 30 H 1.08997 * 109.47225 * 155.35166 * 8 7 5 31 31 H 1.08997 * 109.47173 * 299.99869 * 11 9 7 32 32 H 1.08999 * 109.46903 * 59.99968 * 11 9 7 33 33 H 1.09005 * 109.47246 * 180.02562 * 11 9 7 34 34 H 0.96994 * 119.99879 * 180.02562 * 15 14 12 35 35 H 1.07993 * 120.50453 * 179.74404 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.2017 0.0000 4 6 3.5864 1.1892 -0.0005 5 6 4.3588 2.4535 -0.0011 6 8 5.4054 2.5257 -0.6143 7 7 3.9007 3.5234 0.6784 8 6 2.6007 3.4622 1.3511 9 6 4.7027 4.7475 0.7445 10 1 5.6296 4.6050 0.1889 11 6 3.9147 5.9072 0.1320 12 6 5.0222 5.0618 2.1833 13 1 4.6633 4.4146 2.9699 14 6 5.7718 6.1761 2.4956 15 7 6.2084 6.9645 1.5377 16 14 6.1684 6.5652 4.2791 17 1 5.1023 7.4297 4.8459 18 1 6.2464 5.3020 5.0557 19 1 7.4715 7.2733 4.3532 20 6 4.2353 -0.0489 -0.0065 21 6 3.4749 -1.2042 -0.0011 22 17 4.2652 -2.7498 -0.0025 23 7 2.1570 -1.1469 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6486 2.1373 0.0008 28 1 1.8113 3.7011 0.6384 29 1 2.4426 2.4585 1.7456 30 1 2.5810 4.1816 2.1698 31 1 3.6837 5.6799 -0.9087 32 1 2.9877 6.0498 0.6872 33 1 4.5117 6.8180 0.1807 34 1 6.7360 7.7482 1.7574 35 1 5.3139 -0.1025 -0.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125799862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:09 Heat of formation + Delta-G solvation = -18.836261 kcal Electronic energy + Delta-G solvation = -19798.784674 eV Core-core repulsion = 16629.343639 eV Total energy + Delta-G solvation = -3169.441036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95958 -40.32153 -37.81806 -37.32733 -35.13910 -34.12331 -33.44373 -31.18858 -28.66914 -27.97748 -27.31495 -25.64643 -24.21992 -22.55905 -20.44269 -18.72623 -18.28845 -18.16363 -17.38110 -17.06593 -16.65735 -16.02495 -15.99839 -15.66648 -14.82307 -14.58453 -14.42429 -14.05782 -13.84243 -13.60993 -13.27165 -13.11670 -13.00522 -12.90148 -12.70126 -12.56066 -12.44322 -12.37960 -12.21586 -12.15034 -11.38160 -11.21450 -11.05151 -10.63412 -10.50747 -9.95493 -9.47374 -8.16708 -6.33367 -0.45982 -0.25836 0.60021 1.41676 1.43811 1.52867 1.65596 2.08744 2.42589 2.48189 3.12116 3.21346 3.28145 3.66326 3.74029 3.95281 4.32094 4.33833 4.35938 4.61339 4.73986 4.83437 4.86107 4.89480 4.95415 4.97838 5.03338 5.06422 5.42563 5.44488 5.52015 5.63194 5.98664 6.12333 6.52243 6.61629 6.72843 7.11780 7.38889 8.87866 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.004403 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.144761 B = 6358.127793 C = 6766.712453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.148 3.852 3 C -0.136 4.136 4 C -0.068 4.068 5 C 0.538 3.462 6 O -0.589 6.589 7 N -0.582 5.582 8 C 0.067 3.933 9 C 0.261 3.739 10 H 0.011 0.989 11 C -0.132 4.132 12 C -0.541 4.541 13 H 0.062 0.938 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.964 3.036 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.287 1.287 20 C -0.126 4.126 21 C 0.172 3.828 22 Cl -0.020 7.020 23 N -0.481 5.481 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.183 0.817 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.022 0.978 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.265 0.735 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 -12.518 -0.814 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.009 3.991 3 C -0.156 4.156 4 C -0.079 4.079 5 C 0.326 3.674 6 O -0.471 6.471 7 N -0.311 5.311 8 C -0.074 4.074 9 C 0.159 3.841 10 H 0.029 0.971 11 C -0.191 4.191 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.182 4.182 15 N -0.554 5.554 16 Si 0.789 3.211 17 H -0.190 1.190 18 H -0.197 1.197 19 H -0.213 1.213 20 C -0.148 4.148 21 C 0.008 3.992 22 Cl 0.009 6.991 23 N -0.194 5.194 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.127 0.873 27 H 0.200 0.800 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.739 -13.172 -1.132 19.067 hybrid contribution 1.661 0.966 0.652 2.029 sum -12.078 -12.206 -0.480 17.178 Atomic orbital electron populations 1.20942 0.84248 1.05617 1.05014 1.21853 0.98998 0.85618 0.92603 1.22985 0.92126 1.02190 0.98250 1.20279 0.95200 0.92595 0.99839 1.18640 0.84811 0.84092 0.79841 1.90727 1.25841 1.84453 1.46086 1.48175 1.21010 1.13222 1.48711 1.22344 0.83064 1.03551 0.98442 1.18673 0.89548 0.79878 0.95989 0.97080 1.21876 0.99830 1.00750 0.96606 1.21534 1.34411 1.09772 0.92196 0.91962 1.25695 0.95075 0.95769 1.01614 1.70014 1.36297 1.15406 1.33652 0.85463 0.77723 0.78249 0.79627 1.19049 1.19740 1.21282 1.21830 1.02127 0.90295 1.00532 1.21405 0.89887 0.87474 1.00401 1.98401 1.77375 1.26871 1.96452 1.66807 1.07969 1.31498 1.13098 0.88358 0.89629 0.87300 0.79971 0.89509 0.89940 0.90271 0.95873 0.92862 0.91278 0.92548 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.16 71.24 0.72 -0.40 16 2 C 0.15 3.02 6.78 42.54 0.29 3.31 16 3 C -0.14 -3.10 7.31 22.63 0.17 -2.93 16 4 C -0.07 -2.16 5.34 -19.88 -0.11 -2.26 16 5 C 0.54 22.43 7.44 86.88 0.65 23.07 16 6 O -0.59 -30.19 16.23 -3.76 -0.06 -30.25 16 7 N -0.58 -23.66 2.75 -829.86 -2.28 -25.94 16 8 C 0.07 1.91 7.78 127.77 0.99 2.90 16 9 C 0.26 13.11 2.63 44.25 0.12 13.23 16 10 H 0.01 0.68 6.90 -2.39 -0.02 0.67 16 11 C -0.13 -6.05 8.97 71.98 0.65 -5.41 16 12 C -0.54 -28.41 7.96 25.60 0.20 -28.20 16 13 H 0.06 3.17 7.42 -2.91 -0.02 3.15 16 14 C 0.02 0.99 5.30 84.65 0.45 1.44 16 15 N -0.92 -51.41 11.32 21.45 0.24 -51.17 16 16 Si 0.96 41.92 29.54 68.60 2.03 43.94 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 20 C -0.13 -3.89 9.49 22.66 0.22 -3.67 16 21 C 0.17 4.71 7.27 84.70 0.62 5.33 16 22 Cl -0.02 -0.47 29.10 -2.72 -0.08 -0.55 16 23 N -0.48 -12.16 10.22 -174.99 -1.79 -13.95 16 24 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 0.68 8.07 -2.39 -0.02 0.66 16 27 H 0.18 3.16 5.07 -2.91 -0.01 3.14 16 28 H 0.09 1.81 6.81 -2.38 -0.02 1.80 16 29 H 0.08 1.95 5.83 -2.39 -0.01 1.94 16 30 H 0.08 2.41 7.10 -2.39 -0.02 2.40 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 33 H 0.07 3.56 6.07 -2.38 -0.01 3.55 16 34 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.14 4.58 8.05 -2.91 -0.02 4.55 16 Total: -1.00 -68.55 308.68 4.13 -64.42 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.12 Total: 7.10 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 4.96 Total: 6.40 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -3.83 Total: -91.07 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.06 Total: -30.25 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -68.55 4.13 -64.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125799862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.588 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds