Wall clock time and date at job start Tue Mar 31 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38115 * 120.02845 * 2 1 4 4 C 1.38388 * 120.05589 * 180.02562 * 3 2 1 5 5 Cl 1.73594 * 119.93474 * 179.97438 * 4 3 2 6 6 C 1.38380 * 120.12656 * 359.97438 * 4 3 2 7 7 C 1.38114 * 120.05823 * 0.02562 * 6 4 3 8 8 C 1.50708 * 120.02613 * 180.02562 * 7 6 4 9 9 C 1.38890 * 120.03011 * 180.02562 * 2 1 3 10 10 N 1.39740 * 120.06378 * 0.02562 * 9 2 1 11 11 C 1.46898 * 111.00278 * 120.00123 * 10 9 2 12 12 C 1.50703 * 109.47198 * 180.02562 * 11 10 9 13 13 O 1.21293 * 119.99941 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99714 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99743 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99608 * 359.97438 * 15 14 12 17 17 C 1.38943 * 120.00096 * 180.02562 * 15 14 12 18 18 N 1.31417 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00216 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47176 * 59.99551 * 19 17 15 21 21 H 1.48496 * 109.47201 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46727 * 299.99805 * 19 17 15 23 23 H 1.08996 * 109.47197 * 89.99525 * 1 2 3 24 24 H 1.08998 * 109.47365 * 210.00261 * 1 2 3 25 25 H 1.09002 * 109.47326 * 330.00304 * 1 2 3 26 26 H 1.07997 * 119.97127 * 359.74488 * 3 2 1 27 27 H 1.07991 * 119.97068 * 179.97438 * 6 4 3 28 28 H 1.08992 * 109.46836 * 269.97827 * 8 7 6 29 29 H 1.08997 * 109.46853 * 29.98007 * 8 7 6 30 30 H 1.09002 * 109.46431 * 149.97473 * 8 7 6 31 31 H 1.00907 * 111.00151 * 243.95874 * 10 9 2 32 32 H 1.08999 * 109.46915 * 299.99765 * 11 10 9 33 33 H 1.09003 * 109.46969 * 60.00015 * 11 10 9 34 34 H 0.96997 * 120.00068 * 0.02562 * 14 12 11 35 35 H 0.96995 * 119.99640 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1958 0.0000 4 6 3.5821 1.1964 -0.0005 5 17 4.4476 2.7012 -0.0012 6 6 4.2772 -0.0001 -0.0005 7 6 3.5910 -1.1988 -0.0005 8 6 4.3488 -2.5015 0.0000 9 6 2.2021 -1.2025 -0.0005 10 7 1.5054 -2.4138 -0.0016 11 6 1.8378 -3.2113 -1.1897 12 6 1.0687 -4.5069 -1.1563 13 8 0.3180 -4.7429 -0.2333 14 7 1.2152 -5.4032 -2.1520 15 6 0.5151 -6.5817 -2.1219 16 1 -0.1533 -6.7918 -1.3001 17 6 0.6665 -7.5061 -3.1482 18 7 1.4803 -7.2506 -4.1479 19 14 -0.2867 -9.1120 -3.1068 20 1 -1.7433 -8.8230 -3.0962 21 1 0.0497 -9.9184 -4.3075 22 1 0.0761 -9.8716 -1.8834 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6582 2.1310 -0.0042 27 1 5.3571 0.0033 -0.0014 28 1 4.5315 -2.8159 -1.0274 29 1 5.3007 -2.3678 0.5139 30 1 3.7621 -3.2627 0.5142 31 1 1.6832 -2.9340 0.8445 32 1 1.5710 -2.6539 -2.0876 33 1 2.9070 -3.4231 -1.1976 34 1 1.8158 -5.2146 -2.8899 35 1 1.5862 -7.8961 -4.8641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125945261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:57 Heat of formation + Delta-G solvation = -20.051925 kcal Electronic energy + Delta-G solvation = -19313.227381 eV Core-core repulsion = 16143.733631 eV Total energy + Delta-G solvation = -3169.493751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22586 -38.19371 -36.81373 -35.13078 -33.89455 -33.60525 -31.27589 -30.31529 -28.12393 -26.81843 -25.81037 -23.98076 -21.33359 -20.93781 -19.36486 -17.95148 -17.18408 -16.41170 -16.07228 -15.24641 -15.08166 -14.49468 -14.26746 -13.93628 -13.65902 -13.39211 -13.20585 -13.11146 -12.79567 -12.67419 -12.43667 -12.05240 -11.71413 -11.58076 -11.49601 -11.34794 -11.05621 -10.96623 -10.89833 -10.46580 -10.24582 -9.53480 -8.77878 -8.62219 -8.53772 -8.17449 -8.00176 -6.44758 -3.85946 1.01923 1.17755 2.00763 3.18027 3.24251 3.28300 3.42882 3.85822 4.05080 4.26573 4.61003 4.67628 4.99981 5.05021 5.17267 5.23197 5.24750 5.48479 5.50893 5.55967 5.63410 5.75581 5.84450 5.90085 5.97452 6.09177 6.10421 6.23417 6.35664 6.53742 6.65610 7.21625 7.52137 7.60911 8.02051 8.56918 9.14117 9.49894 10.00800 10.72741 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035401 B = 0.003337 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.743975 B = 8389.388216 C = 8764.861294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.045 4.045 3 C -0.116 4.116 4 C -0.034 4.034 5 Cl -0.080 7.080 6 C -0.111 4.111 7 C -0.103 4.103 8 C -0.121 4.121 9 C 0.103 3.897 10 N -0.623 5.623 11 C 0.041 3.959 12 C 0.440 3.560 13 O -0.583 6.583 14 N -0.561 5.561 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.133 0.867 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.361 0.639 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.392 0.608 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 15.655 5.739 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.046 4.046 3 C -0.135 4.135 4 C -0.061 4.061 5 Cl -0.051 7.051 6 C -0.131 4.131 7 C -0.106 4.106 8 C -0.178 4.178 9 C 0.007 3.993 10 N -0.257 5.257 11 C -0.090 4.090 12 C 0.226 3.774 13 O -0.467 6.467 14 N -0.198 5.198 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.178 4.178 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.187 0.813 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.442 15.716 5.922 17.654 hybrid contribution 1.005 -0.787 -0.420 1.343 sum 6.447 14.929 5.502 17.167 Atomic orbital electron populations 1.20688 0.89703 1.03159 1.02796 1.19814 0.96969 0.90556 0.97308 1.20851 0.91711 0.98488 1.02445 1.20823 0.92378 0.86684 1.06179 1.98354 1.77047 1.32622 1.97068 1.20739 1.00016 0.90063 1.02233 1.20625 0.94394 0.95353 1.00257 1.20972 0.99977 0.93776 1.03058 1.18685 0.89137 0.91878 0.99645 1.57589 1.58583 1.03665 1.05829 1.22024 0.99177 0.94256 0.93527 1.19721 0.86996 0.85529 0.85172 1.90529 1.41316 1.78588 1.36315 1.41834 1.40372 1.16461 1.21087 1.19656 1.22161 0.93327 1.07899 0.87920 1.25264 0.97399 0.99915 0.95262 1.69604 1.36764 1.37106 1.10738 0.85915 0.79792 0.80924 0.77585 1.19845 1.20963 1.19892 0.91038 0.89387 0.92280 0.84956 0.85267 0.90019 0.91103 0.90997 0.81318 0.89506 0.91965 0.77445 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.77 36.01 0.35 -0.92 16 2 C -0.05 -0.58 5.90 -104.43 -0.62 -1.19 16 3 C -0.12 -1.33 9.48 -39.57 -0.38 -1.70 16 4 C -0.03 -0.39 6.32 -39.47 -0.25 -0.64 16 5 Cl -0.08 -0.83 28.95 -51.86 -1.50 -2.33 16 6 C -0.11 -1.27 9.48 -39.57 -0.38 -1.65 16 7 C -0.10 -1.28 5.75 -104.42 -0.60 -1.88 16 8 C -0.12 -1.36 8.12 36.01 0.29 -1.07 16 9 C 0.10 1.42 5.56 -83.77 -0.47 0.95 16 10 N -0.62 -9.89 4.76 -59.52 -0.28 -10.17 16 11 C 0.04 0.70 5.53 -4.98 -0.03 0.68 16 12 C 0.44 10.07 7.82 -10.98 -0.09 9.98 16 13 O -0.58 -15.34 15.78 5.55 0.09 -15.25 16 14 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 15 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 17 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 19 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.09 1.20 7.46 -51.93 -0.39 0.81 16 25 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.08 0.90 7.05 -51.93 -0.37 0.54 16 29 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 30 H 0.07 0.87 6.41 -51.93 -0.33 0.54 16 31 H 0.36 5.83 7.76 -39.29 -0.31 5.52 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 0.95 4.31 -51.93 -0.22 0.72 16 34 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 312.52 15.07 4.71 4.71 Total: -1.00 -29.58 312.52 -7.71 -37.29 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -3.98 Total: 12.71 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.39 Total: -5.32 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.38 Total: -47.56 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.09 Total: -15.25 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.58 -7.71 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125945261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.240 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds