Wall clock time and date at job start Tue Mar 31 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38160 * 120.03123 * 2 1 4 4 C 1.38244 * 120.09294 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.14756 * 359.97438 * 4 3 2 6 6 C 1.38186 * 120.05619 * 0.02562 * 5 4 3 7 7 Cl 1.73599 * 120.04400 * 180.26956 * 6 5 4 8 8 C 1.38803 * 120.02855 * 180.02562 * 2 1 3 9 9 N 1.40010 * 120.07196 * 0.02562 * 8 2 1 10 10 C 1.34783 * 119.99840 * 91.90807 * 9 8 2 11 11 O 1.21588 * 119.99702 * 5.01286 * 10 9 8 12 12 N 1.34776 * 120.00136 * 185.00728 * 10 9 8 13 13 C 1.46497 * 120.00242 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.46945 * 325.00631 * 13 12 10 15 15 C 1.53006 * 109.46803 * 84.99809 * 13 12 10 16 16 C 1.50695 * 109.47515 * 205.00279 * 13 12 10 17 17 H 1.08002 * 119.99724 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00255 * 180.02562 * 16 13 12 19 19 N 1.31519 * 120.00084 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00249 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47276 * 89.99384 * 20 18 16 22 22 H 1.48502 * 109.47506 * 209.99896 * 20 18 16 23 23 H 1.48502 * 109.46835 * 329.99715 * 20 18 16 24 24 H 1.08992 * 109.47284 * 269.97840 * 1 2 3 25 25 H 1.09006 * 109.46909 * 29.98194 * 1 2 3 26 26 H 1.09005 * 109.47141 * 149.97742 * 1 2 3 27 27 H 1.08001 * 119.94799 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.92756 * 180.02562 * 4 3 2 29 29 H 1.08006 * 119.97136 * 179.97438 * 5 4 3 30 30 H 0.96998 * 120.00291 * 271.90983 * 9 8 2 31 31 H 0.97000 * 119.99727 * 0.02562 * 12 10 9 32 32 H 1.08995 * 109.47392 * 300.00601 * 15 13 12 33 33 H 1.09008 * 109.46700 * 60.00671 * 15 13 12 34 34 H 1.08999 * 109.46761 * 179.97438 * 15 13 12 35 35 H 0.96989 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1976 -0.0005 5 6 4.2768 0.0024 -0.0005 6 6 3.5914 -1.1975 -0.0005 7 17 4.4652 -2.6975 0.0065 8 6 2.2016 -1.2017 -0.0005 9 7 1.5037 -2.4155 -0.0016 10 6 1.2019 -3.0183 -1.1688 11 8 1.6138 -2.5568 -2.2156 12 7 0.4438 -4.1326 -1.1755 13 6 0.1163 -4.7881 -2.4440 14 1 -0.0125 -4.0336 -3.2202 15 6 1.2521 -5.7351 -2.8368 16 6 -1.1610 -5.5725 -2.2891 17 1 -1.6774 -5.5816 -1.3406 18 6 -1.6704 -6.2787 -3.3581 19 7 -1.0417 -6.2674 -4.5132 20 14 -3.2540 -7.2505 -3.1662 21 1 -4.4109 -6.3840 -3.5065 22 1 -3.2289 -8.4230 -4.0772 23 1 -3.3813 -7.7172 -1.7622 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6581 2.1313 0.0004 28 1 4.1187 2.1341 -0.0001 29 1 5.3569 0.0069 -0.0014 30 1 1.2373 -2.8226 0.8375 31 1 0.1151 -4.5005 -0.3404 32 1 2.1759 -5.1677 -2.9489 33 1 1.3809 -6.4895 -2.0607 34 1 1.0081 -6.2231 -3.7804 35 1 -1.4003 -6.7638 -5.2653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128995455.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:33 Heat of formation + Delta-G solvation = -15.628537 kcal Electronic energy + Delta-G solvation = -19766.487411 eV Core-core repulsion = 16597.185472 eV Total energy + Delta-G solvation = -3169.301938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23797 -38.52499 -36.35895 -35.07909 -34.11574 -32.51640 -32.24935 -29.82461 -28.32455 -26.81776 -25.21262 -22.91383 -21.78225 -20.91974 -19.80585 -18.18860 -17.50388 -16.20172 -16.02885 -15.77454 -15.01365 -14.41543 -14.17496 -13.86336 -13.69374 -13.41067 -13.20069 -12.68976 -12.54605 -12.34058 -11.76945 -11.58564 -11.55111 -11.21831 -11.05042 -10.96836 -10.77002 -10.70121 -10.27670 -10.19651 -9.44598 -9.07176 -8.96466 -8.72207 -8.63698 -8.52228 -7.82794 -6.09640 -4.18629 1.10691 1.17212 2.23780 3.24079 3.26360 3.33010 3.35595 3.58208 3.92708 4.34461 4.70886 4.79985 4.98540 5.15127 5.22721 5.26661 5.34530 5.56753 5.65154 5.69478 6.07864 6.14604 6.25135 6.42378 6.58002 6.84241 7.04838 7.08797 7.17145 7.28272 7.54537 7.65884 7.88713 8.05523 8.19848 8.78773 8.93694 9.35805 9.52012 10.96453 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026821 B = 0.004441 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.703809 B = 6304.053105 C = 6929.155176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.115 4.115 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.024 4.024 7 Cl -0.059 7.059 8 C 0.177 3.823 9 N -0.713 5.713 10 C 0.701 3.299 11 O -0.584 6.584 12 N -0.722 5.722 13 C 0.282 3.718 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.401 0.599 31 H 0.385 0.615 32 H 0.015 0.985 33 H 0.025 0.975 34 H 0.089 0.911 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.943 12.414 12.578 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.069 4.069 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.052 4.052 7 Cl -0.030 7.030 8 C 0.083 3.917 9 N -0.369 5.369 10 C 0.402 3.598 11 O -0.461 6.461 12 N -0.374 5.374 13 C 0.180 3.820 14 H 0.066 0.934 15 C -0.206 4.206 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.237 0.763 31 H 0.217 0.783 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.108 0.892 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.329 12.546 11.337 18.429 hybrid contribution -0.920 -1.095 0.797 1.637 sum 6.409 11.451 12.134 17.873 Atomic orbital electron populations 1.20739 0.90172 1.03741 1.02268 1.20169 0.96889 0.91734 0.98124 1.21008 0.94165 0.97335 1.00886 1.21063 0.94163 0.97496 0.99741 1.20936 1.00348 0.90492 1.01898 1.21408 0.91809 0.88031 1.03968 1.98376 1.75549 1.32431 1.96645 1.16837 0.87963 0.85743 1.01180 1.42570 1.62829 1.22875 1.08604 1.16069 0.79789 0.81052 0.82925 1.90904 1.58061 1.66923 1.30227 1.45792 1.52941 1.26448 1.12173 1.18634 0.92660 0.91092 0.79573 0.93441 1.22095 0.96675 0.99059 1.02790 1.21211 1.07433 1.30537 0.97878 0.92119 1.24877 0.97505 0.96312 0.95009 1.69910 1.38863 1.41702 1.01581 0.86447 0.83153 0.79461 0.78001 1.20594 1.21099 1.19886 0.90982 0.91258 0.90685 0.85277 0.85124 0.84941 0.76294 0.78335 0.96583 0.95609 0.89227 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.77 36.01 0.35 -1.00 16 2 C -0.07 -0.89 5.90 -104.44 -0.62 -1.51 16 3 C -0.12 -1.26 9.70 -39.61 -0.38 -1.64 16 4 C -0.11 -1.09 10.04 -39.55 -0.40 -1.49 16 5 C -0.12 -1.40 9.82 -39.58 -0.39 -1.79 16 6 C -0.02 -0.35 6.34 -39.33 -0.25 -0.59 16 7 Cl -0.06 -0.90 28.44 -51.86 -1.47 -2.37 16 8 C 0.18 2.69 5.26 -83.64 -0.44 2.25 16 9 N -0.71 -11.26 3.75 -14.19 -0.05 -11.32 16 10 C 0.70 14.53 7.95 -86.91 -0.69 13.84 16 11 O -0.58 -14.80 15.99 5.29 0.08 -14.71 16 12 N -0.72 -15.29 5.07 -59.81 -0.30 -15.60 16 13 C 0.28 7.30 2.56 -69.08 -0.18 7.13 16 14 H 0.05 1.42 7.58 -51.92 -0.39 1.03 16 15 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 16 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.07 1.11 7.01 -51.93 -0.36 0.75 16 27 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 30 H 0.40 5.07 8.84 -40.82 -0.36 4.71 16 31 H 0.38 6.97 8.56 -40.82 -0.35 6.62 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -32.22 316.84 -8.69 -40.91 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.28 Total: 8.09 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.04 Total: -0.98 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.27 Total: -51.36 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.47 Total: -2.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.22 -8.69 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128995455.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.284 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds