Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99613 * 2 1 4 4 C 1.50699 * 109.47304 * 269.99544 * 3 2 1 5 5 H 1.08008 * 119.99978 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00649 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00473 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99920 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47341 * 89.99847 * 8 6 4 10 10 H 1.48500 * 109.47204 * 210.00017 * 8 6 4 11 11 H 1.48505 * 109.46926 * 329.99973 * 8 6 4 12 12 C 1.34774 * 120.00215 * 179.97438 * 2 1 3 13 13 O 1.21571 * 119.99816 * 184.49061 * 12 2 1 14 14 C 1.47717 * 120.00191 * 4.50213 * 12 2 1 15 15 C 1.39678 * 120.11512 * 303.85087 * 14 12 2 16 16 C 1.37815 * 119.87708 * 180.25093 * 15 14 12 17 17 C 1.38674 * 120.11915 * 359.45633 * 16 15 14 18 18 F 1.35101 * 119.88107 * 180.27195 * 17 16 15 19 19 C 1.38632 * 120.24006 * 0.29959 * 17 16 15 20 20 C 1.37853 * 120.11847 * 359.97310 * 19 17 16 21 21 N 1.48021 * 120.06078 * 179.97438 * 20 19 17 22 22 O 1.21799 * 119.99888 * 353.45391 * 21 20 19 23 23 O 1.21804 * 120.00033 * 173.45699 * 21 20 19 24 24 H 1.08994 * 109.47486 * 264.77429 * 1 2 3 25 25 H 1.08992 * 109.47137 * 24.78449 * 1 2 3 26 26 H 1.09002 * 109.46194 * 144.78355 * 1 2 3 27 27 H 1.09001 * 109.47358 * 29.99693 * 3 2 1 28 28 H 1.08999 * 109.47465 * 149.99449 * 3 2 1 29 29 H 0.96995 * 120.00171 * 180.02562 * 7 6 4 30 30 H 1.07993 * 120.05883 * 359.97438 * 15 14 12 31 31 H 1.08001 * 119.93536 * 179.72385 * 16 15 14 32 32 H 1.07998 * 119.94020 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1268 2.8774 -1.6728 7 7 3.3457 3.2573 -2.9128 8 14 3.7349 3.9282 -0.2531 9 1 5.1083 3.5060 0.1225 10 1 3.7507 5.3550 -0.6644 11 1 2.8291 3.7588 0.9115 12 6 2.1390 -1.1671 0.0005 13 8 3.3519 -1.1686 0.0830 14 6 1.4039 -2.4445 -0.0993 15 6 0.4049 -2.7525 0.8271 16 6 -0.2742 -3.9480 0.7324 17 6 0.0248 -4.8394 -0.2869 18 9 -0.6478 -6.0075 -0.3784 19 6 1.0119 -4.5364 -1.2121 20 6 1.7012 -3.3460 -1.1234 21 7 2.7552 -3.0241 -2.1115 22 8 3.0973 -3.8581 -2.9306 23 8 3.2805 -1.9251 -2.1055 24 1 -0.3634 -0.0936 1.0233 25 1 -0.3633 0.9329 -0.4308 26 1 -0.3632 -0.8396 -0.5927 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1386 0.5139 29 1 3.8231 4.0828 -3.0901 30 1 0.1683 -2.0571 1.6187 31 1 -1.0437 -4.1890 1.4509 32 1 1.2405 -5.2340 -2.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132803982.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = -34.245139 kcal Electronic energy + Delta-G solvation = -22254.419101 eV Core-core repulsion = 18520.140417 eV Total energy + Delta-G solvation = -3734.278684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.53250 -42.00498 -40.05041 -38.31146 -36.18451 -35.14284 -32.66262 -32.33455 -31.43789 -28.50158 -26.83268 -26.14723 -24.11911 -23.01509 -22.09822 -19.88142 -19.05288 -18.40686 -17.37013 -17.11942 -17.05118 -16.86544 -16.67844 -16.18755 -15.69090 -14.95500 -14.70144 -14.31660 -13.89712 -13.75515 -12.99454 -12.89152 -12.61986 -12.36716 -12.29376 -12.09884 -11.54661 -11.21410 -11.01121 -10.76802 -10.65528 -10.53330 -10.18695 -10.06228 -9.65044 -9.43504 -9.29389 -8.55357 -7.87547 -6.04095 -4.03463 -0.35730 0.26574 1.31144 1.43111 2.62368 3.01904 3.30539 3.35699 3.38644 3.44691 3.54468 3.96708 4.18440 4.33869 4.41895 4.44197 4.69219 5.09007 5.15517 5.27635 5.32580 5.38658 5.40923 5.59832 5.89915 5.98432 6.54197 6.57068 6.86740 7.14453 7.59819 7.88367 7.96103 8.45524 8.66455 9.01604 9.54350 11.09308 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.005413 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.505336 B = 5171.812958 C = 5835.440503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.583 5.583 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.547 3.453 13 O -0.498 6.498 14 C -0.059 4.059 15 C -0.065 4.065 16 C -0.109 4.109 17 C 0.113 3.887 18 F -0.122 7.122 19 C -0.099 4.099 20 C 0.020 3.980 21 N 0.010 4.990 22 O -0.180 6.180 23 O -0.069 6.069 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 -14.317 9.266 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.314 5.314 3 C 0.098 3.902 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.330 3.670 13 O -0.372 6.372 14 C -0.064 4.064 15 C -0.084 4.084 16 C -0.128 4.128 17 C 0.092 3.908 18 F -0.100 7.100 19 C -0.119 4.119 20 C -0.064 4.064 21 N 0.535 4.465 22 O -0.386 6.386 23 O -0.301 6.301 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.180 0.820 31 H 0.177 0.823 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.356 -14.445 9.630 20.745 hybrid contribution 0.366 0.372 0.200 0.559 sum -10.990 -14.072 9.830 20.382 Atomic orbital electron populations 1.21813 0.80855 1.03686 1.00263 1.47734 1.06275 1.06624 1.70805 1.19786 0.92538 0.78947 0.98953 1.21270 1.37239 1.07149 0.90978 0.90426 1.24822 0.95188 0.97305 0.95454 1.69894 1.41226 1.23478 1.18600 0.86902 0.80249 0.79857 0.82916 1.19808 1.21117 1.19191 1.17629 0.87275 0.82670 0.79426 1.90854 1.12362 1.85978 1.48004 1.20379 0.95921 0.96421 0.93657 1.21288 0.92327 0.96648 0.98119 1.21492 1.00710 0.93030 0.97528 1.17369 0.93344 0.83661 0.96383 1.91583 1.78096 1.44629 1.95717 1.20820 0.94553 0.96031 1.00464 1.20822 0.95005 0.96791 0.93738 1.43466 1.01013 1.01360 1.00689 1.94491 1.66741 1.44398 1.32957 1.94891 1.52919 1.07292 1.75022 0.93169 0.89662 0.92707 0.94829 0.94085 0.92550 0.81991 0.82290 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 9.21 59.85 0.55 1.62 16 2 N -0.58 -11.38 2.86 -184.13 -0.53 -11.90 16 3 C 0.22 5.11 4.24 -5.19 -0.02 5.09 16 4 C -0.53 -14.95 9.94 -34.44 -0.34 -15.29 16 5 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 6 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 7 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 8 Si 0.87 21.20 27.47 -169.99 -4.67 16.53 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 12 C 0.55 10.88 5.70 -12.39 -0.07 10.81 16 13 O -0.50 -12.08 14.41 -18.65 -0.27 -12.35 16 14 C -0.06 -0.88 4.63 -104.97 -0.49 -1.37 16 15 C -0.06 -0.62 8.03 -39.20 -0.31 -0.94 16 16 C -0.11 -0.81 10.01 -39.58 -0.40 -1.21 16 17 C 0.11 1.04 7.31 -39.28 -0.29 0.75 16 18 F -0.12 -1.09 17.26 2.25 0.04 -1.05 16 19 C -0.10 -1.15 9.52 -39.58 -0.38 -1.52 16 20 C 0.02 0.31 6.86 -79.57 -0.55 -0.24 16 21 N 0.01 0.20 4.45 34.15 0.15 0.35 16 22 O -0.18 -3.41 18.46 -29.46 -0.54 -3.95 16 23 O -0.07 -1.65 15.05 -37.04 -0.56 -2.21 16 24 H 0.05 0.50 7.40 -51.93 -0.38 0.11 16 25 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 26 H 0.05 0.67 6.53 -51.93 -0.34 0.33 16 27 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 28 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.16 1.15 7.03 -52.49 -0.37 0.78 16 31 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.17 1.72 7.62 -52.49 -0.40 1.32 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -35.41 290.56 -6.25 -41.66 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: -2.64 Total: -4.45 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.39 Total: -0.22 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.40 Total: -38.35 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.37 Total: -18.51 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.41 -6.25 -41.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132803982.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.417 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds