Wall clock time and date at job start Tue Mar 31 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47407 * 2 1 4 4 C 1.50694 * 109.47347 * 239.99473 * 2 1 3 5 5 H 1.08008 * 120.00170 * 240.00272 * 4 2 1 6 6 C 1.37879 * 120.00069 * 60.00437 * 4 2 1 7 7 N 1.31514 * 120.00079 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99827 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47533 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47214 * 119.99954 * 8 6 4 11 11 H 1.48511 * 109.47031 * 239.99667 * 8 6 4 12 12 N 1.46507 * 109.46801 * 119.99358 * 2 1 3 13 13 C 1.34775 * 119.99889 * 275.00169 * 12 2 1 14 14 O 1.21563 * 120.00363 * 359.97438 * 13 12 2 15 15 C 1.47733 * 119.99400 * 180.02562 * 13 12 2 16 16 C 1.39667 * 120.11617 * 305.05933 * 15 13 12 17 17 C 1.37816 * 119.87671 * 180.02562 * 16 15 13 18 18 C 1.38674 * 120.12020 * 0.02562 * 17 16 15 19 19 F 1.35104 * 119.88434 * 179.97438 * 18 17 16 20 20 C 1.38637 * 120.24053 * 0.02562 * 18 17 16 21 21 C 1.37859 * 120.11591 * 359.68536 * 20 18 17 22 22 N 1.48018 * 120.06276 * 180.29528 * 21 20 18 23 23 O 1.21798 * 119.99817 * 353.45439 * 22 21 20 24 24 O 1.21798 * 119.99869 * 173.45344 * 22 21 20 25 25 H 1.09004 * 109.46773 * 60.00140 * 1 2 3 26 26 H 1.09000 * 109.47407 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47329 * 300.00594 * 1 2 3 28 28 H 0.96997 * 120.00195 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99328 * 95.00062 * 12 2 1 30 30 H 1.07998 * 120.06151 * 0.03069 * 16 15 13 31 31 H 1.07999 * 119.94127 * 180.02562 * 17 16 15 32 32 H 1.07996 * 119.93993 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3215 -1.1207 -4.0077 9 1 3.1465 -2.2874 -3.6035 10 1 1.1663 -1.5870 -4.8159 11 1 3.1469 -0.1877 -4.8164 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3572 14 8 1.8582 1.1616 2.4116 15 6 2.6398 -0.7143 3.5633 16 6 2.0021 -1.8724 4.0138 17 6 2.4657 -2.5177 5.1398 18 6 3.5630 -2.0188 5.8256 19 9 4.0132 -2.6549 6.9292 20 6 4.1990 -0.8691 5.3834 21 6 3.7472 -0.2191 4.2548 22 7 4.4312 1.0047 3.7800 23 8 5.3168 1.5060 4.4494 24 8 4.1085 1.5104 2.7200 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7083 1.1606 -3.4845 29 1 2.2489 -1.6317 1.1528 30 1 1.1473 -2.2615 3.4806 31 1 1.9737 -3.4134 5.4888 32 1 5.0529 -0.4846 5.9215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135013758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:04 Heat of formation + Delta-G solvation = -53.003181 kcal Electronic energy + Delta-G solvation = -21832.016121 eV Core-core repulsion = 18096.924027 eV Total energy + Delta-G solvation = -3735.092094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.54133 -42.10723 -39.91394 -38.27181 -36.32073 -34.89950 -32.65916 -32.32937 -31.43408 -28.84862 -26.78039 -25.30615 -24.20021 -22.94541 -21.46183 -19.89165 -19.46440 -18.55947 -18.07414 -17.38919 -16.99443 -16.75648 -16.19986 -16.04900 -15.47784 -14.99732 -14.49787 -14.40009 -13.85397 -13.47461 -13.03015 -12.90458 -12.45805 -12.31310 -11.79505 -11.35549 -11.17054 -11.06294 -10.91466 -10.84438 -10.76154 -10.34030 -10.28555 -10.09506 -9.50834 -9.33780 -9.08869 -8.59982 -8.05589 -6.15246 -4.24694 -0.40819 0.26452 1.22951 1.34144 2.62012 3.14927 3.22642 3.30931 3.32912 3.44258 3.60955 3.97920 4.18868 4.30767 4.42091 4.59406 4.82664 5.13940 5.17864 5.27444 5.40719 5.41968 5.89302 6.42626 6.75337 6.85976 7.06658 7.30587 7.43936 7.62562 7.76811 7.85328 8.09105 8.46437 8.68164 8.91118 9.42257 10.90888 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.004621 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.355499 B = 6058.259414 C = 6469.657675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.691 5.691 13 C 0.538 3.462 14 O -0.510 6.510 15 C -0.061 4.061 16 C -0.063 4.063 17 C -0.106 4.106 18 C 0.111 3.889 19 F -0.122 7.122 20 C -0.098 4.098 21 C 0.017 3.983 22 N 0.016 4.984 23 O -0.177 6.177 24 O -0.086 6.086 25 H 0.093 0.907 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -9.183 15.138 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.075 0.925 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.339 5.339 13 C 0.320 3.680 14 O -0.386 6.386 15 C -0.066 4.066 16 C -0.082 4.082 17 C -0.125 4.125 18 C 0.091 3.909 19 F -0.100 7.100 20 C -0.118 4.118 21 C -0.067 4.067 22 N 0.540 4.460 23 O -0.385 6.385 24 O -0.316 6.316 25 H 0.111 0.889 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.062 -8.810 15.342 17.811 hybrid contribution 0.721 -0.769 -0.645 1.235 sum 2.783 -9.579 14.697 17.763 Atomic orbital electron populations 1.22096 0.98194 0.99154 1.01167 1.18889 0.91024 0.94462 0.79281 0.92511 1.21193 1.32617 1.13293 0.90180 0.92049 1.24865 0.94753 0.94916 0.99031 1.69900 1.35715 1.22339 1.23889 0.86388 0.78583 0.79514 0.82560 1.19806 1.20889 1.20779 1.46503 1.64013 1.13461 1.09907 1.17738 0.80372 0.86996 0.82919 1.90853 1.49755 1.14108 1.83868 1.20535 0.93156 0.95192 0.97696 1.21294 0.99723 0.91763 0.95452 1.21535 0.94844 1.01179 0.94901 1.17375 0.95305 0.92201 0.86015 1.91585 1.88350 1.80445 1.49656 1.20809 1.01725 0.94307 0.94972 1.20785 0.97365 0.90215 0.98305 1.43408 1.00041 1.01443 1.01085 1.94499 1.23509 1.64147 1.56303 1.94796 1.66052 1.62262 1.08492 0.88877 0.95416 0.96567 0.92531 0.77843 0.81789 0.82257 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.26 37.15 0.34 -3.14 16 2 C 0.26 6.48 2.56 -69.08 -0.18 6.30 16 3 H 0.06 1.63 7.58 -51.93 -0.39 1.24 16 4 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.32 11.32 55.43 0.63 -23.69 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.69 -13.61 5.05 -55.92 -0.28 -13.89 16 13 C 0.54 10.42 5.81 -12.38 -0.07 10.35 16 14 O -0.51 -12.04 14.42 -18.79 -0.27 -12.31 16 15 C -0.06 -0.88 5.64 -104.96 -0.59 -1.48 16 16 C -0.06 -0.62 9.74 -39.20 -0.38 -1.00 16 17 C -0.11 -0.80 10.01 -39.57 -0.40 -1.20 16 18 C 0.11 1.01 7.31 -39.27 -0.29 0.72 16 19 F -0.12 -1.08 17.26 2.25 0.04 -1.04 16 20 C -0.10 -1.08 9.53 -39.57 -0.38 -1.46 16 21 C 0.02 0.25 6.85 -79.57 -0.55 -0.30 16 22 N 0.02 0.29 4.45 34.15 0.15 0.45 16 23 O -0.18 -3.08 18.46 -29.46 -0.54 -3.62 16 24 O -0.09 -1.86 14.99 -37.09 -0.56 -2.42 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.39 6.43 8.50 -40.82 -0.35 6.09 16 30 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.17 1.60 7.62 -52.49 -0.40 1.20 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -31.39 295.78 -6.96 -38.35 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -2.69 Total: 2.00 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.88 Total: -3.55 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.50 Total: -37.13 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.37 Total: -18.34 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.39 -6.96 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135013758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.652 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds