Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39760 * 120.07533 * 260.27849 * 3 2 1 5 5 C 1.38051 * 120.13423 * 179.71792 * 4 3 2 6 6 C 1.38100 * 120.30749 * 0.55809 * 5 4 3 7 7 C 1.39663 * 120.15652 * 359.72382 * 6 5 4 8 8 C 1.47844 * 120.07475 * 180.02562 * 7 6 5 9 9 O 1.21574 * 120.00200 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99321 * 359.97438 * 8 7 6 11 11 C 1.40526 * 119.99515 * 179.97438 * 10 8 7 12 12 C 1.40661 * 126.08811 * 359.68738 * 11 10 8 13 13 N 1.30906 * 108.38904 * 179.85335 * 12 11 10 14 14 N 1.40066 * 108.40997 * 0.40846 * 13 12 11 15 15 C 1.37319 * 126.06741 * 179.74456 * 14 13 12 16 16 H 1.07998 * 120.00249 * 180.02562 * 15 14 13 17 17 C 1.38992 * 119.99925 * 359.97438 * 15 14 13 18 18 N 1.31296 * 119.99621 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47234 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47388 * 120.00078 * 19 17 15 22 22 H 1.48503 * 109.47086 * 240.00013 * 19 17 15 23 23 C 1.35699 * 126.08549 * 180.02562 * 11 10 8 24 24 C 1.39341 * 119.85878 * 359.97438 * 7 6 5 25 25 H 1.07993 * 119.93088 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.84503 * 180.28128 * 5 4 3 27 27 H 1.07997 * 119.91853 * 179.73995 * 6 5 4 28 28 H 0.96997 * 120.00333 * 359.97438 * 10 8 7 29 29 H 1.08001 * 125.80458 * 359.97438 * 12 11 10 30 30 H 0.97004 * 119.99307 * 179.97438 * 18 17 15 31 31 H 1.08004 * 126.24658 * 359.95016 * 23 11 10 32 32 H 1.07998 * 120.15190 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.2052 1.1921 5 6 4.6488 0.2002 1.1945 6 6 5.3470 0.0050 0.0191 7 6 4.6599 -0.1948 -1.1803 8 6 5.4093 -0.4042 -2.4374 9 8 4.8098 -0.5784 -3.4806 10 7 6.7570 -0.4020 -2.4268 11 6 7.4693 -0.6016 -3.6216 12 6 6.9095 -0.8208 -4.8932 13 7 7.8846 -0.9592 -5.7555 14 7 9.1008 -0.8439 -5.0703 15 6 10.3534 -0.9363 -5.6253 16 1 11.2292 -0.8319 -5.0021 17 6 10.4941 -1.1653 -6.9889 18 7 9.4293 -1.2927 -7.7464 19 14 12.1980 -1.2918 -7.7438 20 1 13.2233 -1.1131 -6.6844 21 1 12.3630 -2.6269 -8.3728 22 1 12.3625 -0.2354 -8.7744 23 6 8.8198 -0.6236 -3.7529 24 6 3.2665 -0.1973 -1.1894 25 1 2.7283 0.3633 2.1139 26 1 5.1852 0.3543 2.1191 27 1 6.4270 0.0065 0.0275 28 1 7.2353 -0.2626 -1.5945 29 1 5.8545 -0.8651 -5.1200 30 1 9.5276 -1.4522 -8.6982 31 1 9.5407 -0.4904 -2.9598 32 1 2.7304 -0.3518 -2.1141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139685461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = 109.508198 kcal Electronic energy + Delta-G solvation = -19739.749563 eV Core-core repulsion = 16474.766467 eV Total energy + Delta-G solvation = -3264.983096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40411 -39.51038 -38.20691 -36.57342 -34.39532 -33.29567 -31.74449 -31.48447 -30.24050 -27.82565 -25.17266 -24.34144 -23.57899 -21.29309 -20.78763 -19.59136 -18.93772 -17.46776 -16.82682 -16.16914 -15.88890 -15.48637 -14.88011 -14.81963 -14.50860 -14.15192 -14.05054 -13.68633 -13.27565 -13.23926 -13.01983 -12.95368 -12.43210 -12.08734 -11.71710 -11.62997 -11.46036 -11.30813 -10.97985 -10.53420 -10.26574 -9.39032 -9.35709 -9.31728 -9.21172 -8.85631 -8.10647 -6.75951 -6.59671 -4.26795 0.33862 0.76123 2.39863 2.43178 2.90847 3.02829 3.09119 3.13233 3.36656 3.54380 3.63354 3.81788 3.83665 4.40779 4.46651 4.49494 4.68867 4.75619 4.94046 4.98613 5.09944 5.29860 5.54318 5.87957 5.89425 5.94658 6.19302 6.32217 6.43425 6.83699 6.90591 7.04294 7.18587 7.21576 7.81544 8.08175 8.21626 8.56011 8.75251 9.32994 9.62134 10.36215 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.048915 B = 0.003011 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.280423 B = 9297.847325 C = 9860.283304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.258 3.742 3 C -0.037 4.037 4 C -0.055 4.055 5 C -0.125 4.125 6 C -0.062 4.062 7 C -0.115 4.115 8 C 0.537 3.463 9 O -0.529 6.529 10 N -0.613 5.613 11 C -0.063 4.063 12 C -0.030 4.030 13 N -0.261 5.261 14 N -0.141 5.141 15 C -0.322 4.322 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.768 5.768 19 Si 0.935 3.065 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.083 4.083 24 C -0.015 4.015 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.396 0.604 29 H 0.177 0.823 30 H 0.275 0.725 31 H 0.146 0.854 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 2.800 16.802 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.058 4.058 3 C -0.040 4.040 4 C -0.076 4.076 5 C -0.143 4.143 6 C -0.082 4.082 7 C -0.119 4.119 8 C 0.323 3.677 9 O -0.407 6.407 10 N -0.255 5.255 11 C -0.169 4.169 12 C -0.205 4.205 13 N -0.091 5.091 14 N 0.092 4.908 15 C -0.454 4.454 16 H 0.135 0.865 17 C -0.172 4.172 18 N -0.394 5.394 19 Si 0.759 3.241 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.234 4.234 24 C -0.037 4.037 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.231 0.769 29 H 0.194 0.806 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.245 2.429 14.564 15.669 hybrid contribution 1.293 0.179 1.072 1.689 sum -3.952 2.608 15.635 16.337 Atomic orbital electron populations 1.81258 1.12005 1.08756 1.07160 1.25603 0.92539 0.93733 0.93886 1.15885 0.84492 1.08563 0.95099 1.21325 0.94486 0.95230 0.96570 1.21036 0.93486 1.01164 0.98597 1.21635 1.00620 0.94274 0.91657 1.19983 0.93718 1.04152 0.94015 1.17907 0.81985 0.79716 0.88066 1.90697 1.68341 1.49685 1.31986 1.42371 1.05114 1.68666 1.09311 1.17229 0.89974 1.23191 0.86467 1.24145 0.99858 1.07048 0.89474 1.78277 0.87332 1.25529 1.18010 1.44577 1.05596 1.37818 1.02825 1.19935 0.80730 1.51603 0.93172 0.86497 1.25659 0.99732 0.95488 0.96304 1.70227 1.28800 1.34272 1.06127 0.85755 0.80348 0.78539 0.79453 1.18670 1.19889 1.19895 1.21254 0.94045 1.19098 0.89011 1.21317 0.92999 0.91957 0.97395 0.84676 0.84272 0.84680 0.76934 0.80629 0.91445 0.83610 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.45 18.54 41.83 0.78 -4.68 16 2 C 0.26 2.79 15.32 -22.47 -0.34 2.45 16 3 C -0.04 -0.34 5.73 -106.99 -0.61 -0.95 16 4 C -0.06 -0.36 9.75 -39.08 -0.38 -0.74 16 5 C -0.12 -0.73 10.02 -39.70 -0.40 -1.13 16 6 C -0.06 -0.49 9.54 -39.10 -0.37 -0.86 16 7 C -0.12 -1.33 5.87 -105.02 -0.62 -1.94 16 8 C 0.54 8.78 7.74 -12.33 -0.10 8.68 16 9 O -0.53 -10.81 13.49 5.30 0.07 -10.74 16 10 N -0.61 -10.04 5.41 -10.85 -0.06 -10.10 16 11 C -0.06 -1.39 6.90 -83.86 -0.58 -1.97 16 12 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 13 N -0.26 -7.43 10.39 30.80 0.32 -7.11 16 14 N -0.14 -3.77 3.74 -11.41 -0.04 -3.81 16 15 C -0.32 -8.30 10.25 -14.81 -0.15 -8.45 16 16 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 17 C 0.05 1.15 5.50 -17.50 -0.10 1.06 16 18 N -0.77 -21.12 11.81 55.50 0.66 -20.46 16 19 Si 0.94 18.51 29.55 -169.99 -5.02 13.48 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.08 -1.87 11.49 -16.39 -0.19 -2.05 16 24 C -0.02 -0.17 9.30 -38.76 -0.36 -0.53 16 25 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 26 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 27 H 0.14 0.77 6.39 -52.49 -0.34 0.44 16 28 H 0.40 4.70 6.85 -40.82 -0.28 4.42 16 29 H 0.18 4.47 5.92 -52.49 -0.31 4.16 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.15 2.67 8.06 -52.48 -0.42 2.25 16 32 H 0.15 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -33.89 299.60 -5.31 -39.20 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -2.14 Total: 7.09 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -4.38 Total: -7.39 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 1.65 Total: -46.15 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.89 -5.31 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139685461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.707 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds