Wall clock time and date at job start Tue Mar 31 2020 06:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38301 * 119.97192 * 2 1 4 4 C 1.38256 * 120.14602 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.09301 * 0.02730 * 4 3 2 6 6 C 1.38804 * 119.94254 * 359.97236 * 5 4 3 7 7 N 1.40004 * 120.07463 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00092 * 334.51067 * 7 6 5 9 9 O 1.21592 * 120.00268 * 4.00942 * 8 7 6 10 10 N 1.34776 * 120.00002 * 184.01335 * 8 7 6 11 11 C 1.46505 * 120.00057 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47160 * 35.00429 * 11 10 8 13 13 C 1.52995 * 109.47346 * 275.00035 * 11 10 8 14 14 C 1.50699 * 109.47048 * 154.99730 * 11 10 8 15 15 H 1.08002 * 120.00282 * 35.00320 * 14 11 10 16 16 C 1.37876 * 120.00307 * 215.00506 * 14 11 10 17 17 N 1.31514 * 120.00184 * 184.97491 * 16 14 11 18 18 Si 1.86802 * 119.99731 * 4.96896 * 16 14 11 19 19 H 1.48507 * 109.46905 * 84.95069 * 18 16 14 20 20 H 1.48502 * 109.47334 * 204.94352 * 18 16 14 21 21 H 1.48490 * 109.47418 * 324.94818 * 18 16 14 22 22 C 1.38185 * 119.96930 * 180.27536 * 2 1 3 23 23 Cl 1.73601 * 120.04970 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.46522 * 89.99516 * 1 2 3 25 25 H 1.09000 * 109.47321 * 209.99732 * 1 2 3 26 26 H 1.08996 * 109.47101 * 330.00559 * 1 2 3 27 27 H 1.07999 * 119.92899 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.95272 * 180.02562 * 4 3 2 29 29 H 1.07999 * 120.03068 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99757 * 154.50499 * 7 6 5 31 31 H 0.97001 * 120.00480 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47020 * 55.01275 * 13 11 10 33 33 H 1.08996 * 109.46840 * 295.00874 * 13 11 10 34 34 H 1.09001 * 109.47035 * 175.01524 * 13 11 10 35 35 H 0.97003 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5805 1.2023 0.0005 5 6 4.2769 0.0090 0.0005 6 6 3.5872 -1.1956 0.0005 7 7 4.2901 -2.4064 -0.0001 8 6 5.5394 -2.4602 -0.5029 9 8 6.0836 -1.4438 -0.8890 10 7 6.1854 -3.6406 -0.5778 11 6 7.5432 -3.6992 -1.1249 12 1 8.0856 -2.7950 -0.8485 13 6 7.4746 -3.8069 -2.6495 14 6 8.2577 -4.9034 -0.5678 15 1 7.7109 -5.8147 -0.3753 16 6 9.6096 -4.8420 -0.3039 17 7 10.2525 -5.9199 0.0891 18 14 10.5280 -3.2278 -0.5047 19 1 10.3926 -2.4236 0.7365 20 1 11.9643 -3.5040 -0.7612 21 1 9.9571 -2.4724 -1.6486 22 6 2.1973 -1.1971 -0.0058 23 17 1.3298 -2.7008 -0.0137 24 1 -0.3632 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6563 2.1324 -0.0004 28 1 4.1169 2.1396 0.0010 29 1 5.3568 0.0135 0.0005 30 1 3.8779 -3.2066 0.3615 31 1 5.7515 -4.4515 -0.2694 32 1 6.8818 -2.9824 -3.0456 33 1 7.0110 -4.7537 -2.9263 34 1 8.4822 -3.7613 -3.0626 35 1 11.2037 -5.8767 0.2744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161555063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:09 Heat of formation + Delta-G solvation = -15.513559 kcal Electronic energy + Delta-G solvation = -19523.442350 eV Core-core repulsion = 16354.145398 eV Total energy + Delta-G solvation = -3169.296952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47332 -38.78272 -36.51107 -35.48251 -34.43974 -32.65185 -32.16995 -30.33806 -28.76226 -26.93997 -25.34909 -22.96298 -22.31687 -20.70817 -19.91631 -18.48973 -17.35459 -16.53648 -16.45990 -15.56350 -15.10612 -14.81252 -14.35591 -14.15786 -13.99604 -13.44949 -13.21247 -12.71288 -12.55345 -12.47904 -12.42222 -12.04689 -11.70435 -11.49621 -11.45772 -11.13456 -10.88655 -10.83195 -10.62394 -10.29243 -9.91862 -9.44466 -9.24290 -8.75490 -8.64403 -8.32862 -7.84413 -6.27712 -4.31996 1.14309 1.30700 2.06474 2.96186 3.25084 3.31946 3.38826 3.44206 3.83427 4.28874 4.63279 4.64310 4.81958 5.12622 5.14479 5.29365 5.38869 5.43736 5.50426 5.70765 5.93214 6.18080 6.24450 6.29771 6.46841 6.49844 6.57716 6.64827 6.81962 7.01996 7.07161 7.27751 7.41590 7.50563 8.18419 8.57553 8.73526 9.01031 9.33820 10.83790 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.004252 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.433712 B = 6583.485962 C = 7196.524556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.090 4.090 5 C -0.134 4.134 6 C 0.198 3.802 7 N -0.688 5.688 8 C 0.694 3.306 9 O -0.584 6.584 10 N -0.711 5.711 11 C 0.246 3.754 12 H 0.052 0.948 13 C -0.148 4.148 14 C -0.531 4.531 15 H 0.079 0.921 16 C 0.082 3.918 17 N -0.887 5.887 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.259 1.259 22 C -0.083 4.083 23 Cl -0.071 7.071 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.167 0.833 30 H 0.406 0.594 31 H 0.392 0.608 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.982 10.768 0.765 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.162 4.162 4 C -0.108 4.108 5 C -0.154 4.154 6 C 0.099 3.901 7 N -0.334 5.334 8 C 0.395 3.605 9 O -0.463 6.463 10 N -0.362 5.362 11 C 0.144 3.856 12 H 0.070 0.930 13 C -0.207 4.207 14 C -0.569 4.569 15 H 0.097 0.903 16 C -0.123 4.123 17 N -0.523 5.523 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.184 1.184 22 C -0.113 4.113 23 Cl -0.042 7.042 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.184 0.816 30 H 0.242 0.758 31 H 0.225 0.775 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.235 11.332 0.427 20.631 hybrid contribution 0.099 -0.279 0.264 0.397 sum -17.136 11.052 0.691 20.403 Atomic orbital electron populations 1.20830 0.90412 1.03210 1.02763 1.19476 0.96309 0.90884 0.99306 1.20894 0.94267 0.96729 1.04304 1.21186 0.93875 0.98135 0.97650 1.21847 1.03202 0.89590 1.00795 1.17363 0.88231 0.86587 0.97871 1.42893 1.16002 1.10446 1.64047 1.16210 0.79997 0.85592 0.78712 1.90770 1.66732 1.33323 1.55434 1.46067 1.18500 1.06488 1.65163 1.19091 0.77819 0.98370 0.90291 0.93038 1.22236 1.00595 0.99488 0.98428 1.20999 0.93978 0.97579 1.44375 0.90286 1.24940 0.97337 0.96524 0.93489 1.69879 1.09834 1.28124 1.44449 0.86879 0.78920 0.84109 0.79921 1.19809 1.21139 1.18388 1.20493 0.90084 0.87278 1.13410 1.98332 1.76391 1.32291 1.97222 0.90808 0.90977 0.91199 0.85529 0.85329 0.81562 0.75755 0.77481 0.95128 0.93403 0.92770 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.61 36.01 0.35 -0.63 16 2 C -0.06 -0.66 5.88 -104.62 -0.62 -1.28 16 3 C -0.14 -1.53 9.70 -39.55 -0.38 -1.91 16 4 C -0.09 -1.09 10.04 -39.60 -0.40 -1.49 16 5 C -0.13 -2.05 8.80 -39.40 -0.35 -2.40 16 6 C 0.20 3.01 6.46 -83.63 -0.54 2.47 16 7 N -0.69 -10.81 5.19 -14.19 -0.07 -10.88 16 8 C 0.69 13.48 8.42 -86.92 -0.73 12.75 16 9 O -0.58 -12.96 12.92 5.28 0.07 -12.89 16 10 N -0.71 -14.17 5.07 -59.81 -0.30 -14.48 16 11 C 0.25 5.78 2.22 -69.08 -0.15 5.62 16 12 H 0.05 1.31 4.72 -51.93 -0.25 1.06 16 13 C -0.15 -3.23 9.47 37.16 0.35 -2.88 16 14 C -0.53 -14.04 9.05 -34.44 -0.31 -14.35 16 15 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 18 Si 0.88 21.23 26.99 -169.99 -4.59 16.64 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.26 -6.19 6.81 56.52 0.38 -5.81 16 22 C -0.08 -1.08 6.33 -39.32 -0.25 -1.33 16 23 Cl -0.07 -0.83 26.14 -51.86 -1.36 -2.18 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.61 6.91 -51.93 -0.36 0.25 16 26 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.17 2.94 5.51 -52.49 -0.29 2.65 16 30 H 0.41 5.43 7.81 -40.82 -0.32 5.11 16 31 H 0.39 6.86 8.61 -40.82 -0.35 6.51 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -30.26 309.43 -8.04 -38.30 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.09 Total: 9.08 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -3.13 Total: -3.26 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.40 Total: -50.36 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.59 Total: 16.64 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.36 Total: -2.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.26 -8.04 -38.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161555063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.789 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds