Wall clock time and date at job start Tue Mar 31 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47054 * 2 1 4 4 C 1.50694 * 109.46744 * 239.99965 * 2 1 3 5 5 H 1.08006 * 120.00006 * 239.99700 * 4 2 1 6 6 C 1.37873 * 120.00245 * 60.00518 * 4 2 1 7 7 N 1.31515 * 120.00033 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00299 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47027 * 59.99647 * 8 6 4 10 10 H 1.48493 * 109.47170 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47011 * 299.99740 * 8 6 4 12 12 N 1.46504 * 109.46784 * 120.00271 * 2 1 3 13 13 C 1.46494 * 120.00092 * 59.99829 * 12 2 1 14 14 C 1.34778 * 119.99665 * 239.99419 * 12 2 1 15 15 O 1.21627 * 120.00125 * 6.09952 * 14 12 2 16 16 C 1.47171 * 119.99819 * 186.09119 * 14 12 2 17 17 C 1.36619 * 125.15780 * 186.86683 * 16 14 12 18 18 C 1.36797 * 114.73612 * 179.79273 * 17 16 14 19 19 C 1.36611 * 114.75249 * 0.50289 * 18 17 16 20 20 C 1.47167 * 125.16522 * 179.70803 * 19 18 17 21 21 N 1.34774 * 119.99880 * 179.97438 * 20 19 18 22 22 O 1.21623 * 119.99884 * 0.02562 * 20 19 18 23 23 S 1.75836 * 109.67539 * 359.72724 * 19 18 17 24 24 H 1.09006 * 109.46948 * 300.00300 * 1 2 3 25 25 H 1.08995 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46990 * 59.99704 * 1 2 3 27 27 H 0.96998 * 120.00448 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.46832 * 95.93959 * 13 12 2 29 29 H 1.09005 * 109.46970 * 215.93729 * 13 12 2 30 30 H 1.08995 * 109.47318 * 335.94318 * 13 12 2 31 31 H 1.07995 * 122.62894 * 0.02562 * 17 16 14 32 32 H 1.08005 * 122.61946 * 180.25254 * 18 17 16 33 33 H 0.96994 * 120.00501 * 0.02562 * 21 20 19 34 34 H 0.97008 * 119.99859 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2204 11 1 3.8074 -1.1190 -4.0078 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 2.9961 1.1561 1.9502 16 6 3.3938 -0.7627 3.2133 17 6 4.0821 -0.1861 4.2430 18 6 4.5459 -1.0640 5.1840 19 6 4.2547 -2.3754 4.9356 20 6 4.6467 -3.5073 5.7905 21 7 4.3024 -4.7637 5.4449 22 8 5.2806 -3.3089 6.8094 23 16 3.3409 -2.5057 3.4390 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 0.7082 1.1610 -3.4843 28 1 2.4670 -2.7352 1.0649 29 1 1.5204 -2.2599 2.4955 30 1 0.7425 -2.3280 0.8959 31 1 4.2440 0.8795 4.3108 32 1 5.1024 -0.7456 6.0532 33 1 3.7966 -4.9219 4.6325 34 1 4.5611 -5.5099 6.0082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550031.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:59 Heat of formation + Delta-G solvation = -34.714566 kcal Electronic energy + Delta-G solvation = -19546.388704 eV Core-core repulsion = 16378.302840 eV Total energy + Delta-G solvation = -3168.085864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68536 -39.31550 -37.04531 -35.45757 -33.97349 -33.06016 -30.46667 -29.02019 -26.66726 -25.58803 -25.25500 -22.22097 -21.66425 -19.70393 -19.16696 -17.75298 -17.14450 -16.84504 -16.36125 -15.62178 -15.36651 -15.12983 -14.73851 -14.69000 -14.15595 -13.39320 -13.09773 -12.81375 -12.78852 -12.66246 -12.36635 -11.85547 -11.64952 -11.16820 -10.97061 -10.86706 -10.75506 -10.36812 -10.31839 -10.25036 -10.03761 -9.40840 -9.28864 -8.85317 -8.61558 -8.52599 -7.79495 -6.16475 -4.25786 0.13486 1.33292 1.71270 2.11502 3.02455 3.21831 3.22205 3.28257 3.28944 3.59624 3.65008 4.31623 4.68732 4.85545 5.14914 5.20377 5.32604 5.35791 5.71737 5.89216 6.00087 6.05810 6.25014 6.44856 6.64761 6.70204 6.91997 6.97930 7.22595 7.35315 7.59575 7.88876 7.93250 8.04597 8.29128 8.64218 8.81876 9.41103 10.88801 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028172 B = 0.004380 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.672425 B = 6390.946633 C = 6841.430544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.582 5.582 13 C 0.068 3.932 14 C 0.569 3.431 15 O -0.531 6.531 16 C -0.200 4.200 17 C -0.090 4.090 18 C -0.059 4.059 19 C -0.288 4.288 20 C 0.599 3.401 21 N -0.851 5.851 22 O -0.536 6.536 23 S 0.212 5.788 24 H 0.014 0.986 25 H 0.031 0.969 26 H 0.096 0.904 27 H 0.265 0.735 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.400 0.600 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -10.627 11.687 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.160 3.840 3 H 0.085 0.915 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.077 4.077 14 C 0.354 3.646 15 O -0.410 6.410 16 C -0.322 4.322 17 C -0.122 4.122 18 C -0.093 4.093 19 C -0.409 4.409 20 C 0.384 3.616 21 N -0.415 5.415 22 O -0.414 6.414 23 S 0.481 5.519 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.176 0.824 32 H 0.169 0.831 33 H 0.229 0.771 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.790 -10.808 11.228 15.687 hybrid contribution 0.775 0.150 -0.280 0.837 sum 2.564 -10.657 10.947 15.492 Atomic orbital electron populations 1.22115 0.97847 0.99505 1.01198 1.19070 0.91203 0.94555 0.79187 0.91523 1.21242 1.32358 1.13255 0.90120 0.92214 1.24882 0.94802 0.94926 0.98984 1.69859 1.35960 1.22435 1.24092 0.86523 0.79291 0.79551 0.81853 1.20159 1.21092 1.20183 1.48197 1.48195 1.11503 1.23379 1.21785 1.02897 0.83648 0.99406 1.17123 0.79744 0.86586 0.81109 1.90788 1.61756 1.13928 1.74546 1.25354 1.08259 0.96318 1.02306 1.20544 0.97361 1.02124 0.92196 1.20496 0.98555 0.90334 0.99872 1.25258 1.12607 0.97944 1.05058 1.17119 0.78245 0.82252 0.84007 1.43679 1.60108 1.08096 1.29583 1.90838 1.40056 1.84857 1.25609 1.84453 1.47311 1.04305 1.15860 0.96707 0.94996 0.88520 0.92457 0.92246 0.92345 0.88446 0.82437 0.83109 0.77100 0.76102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.96 37.16 0.33 -3.03 16 2 C 0.26 6.33 2.62 -69.08 -0.18 6.15 16 3 H 0.07 1.90 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -13.69 8.37 -34.44 -0.29 -13.98 16 5 H 0.06 1.50 7.65 -52.48 -0.40 1.10 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.17 11.32 55.43 0.63 -23.54 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.58 -11.88 2.75 -176.63 -0.49 -12.37 16 13 C 0.07 1.06 8.03 59.84 0.48 1.54 16 14 C 0.57 11.65 7.64 -12.63 -0.10 11.55 16 15 O -0.53 -12.81 16.18 5.25 0.08 -12.72 16 16 C -0.20 -3.19 6.21 -36.54 -0.23 -3.42 16 17 C -0.09 -1.28 9.89 -40.69 -0.40 -1.69 16 18 C -0.06 -0.76 9.88 -40.69 -0.40 -1.16 16 19 C -0.29 -3.58 6.46 -36.55 -0.24 -3.81 16 20 C 0.60 7.26 8.07 -12.64 -0.10 7.16 16 21 N -0.85 -6.64 8.87 30.37 0.27 -6.37 16 22 O -0.54 -8.32 17.65 5.26 0.09 -8.22 16 23 S 0.21 2.49 17.13 -107.50 -1.84 0.64 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.03 0.65 6.67 -51.93 -0.35 0.31 16 26 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 28 H 0.06 0.85 7.47 -51.93 -0.39 0.46 16 29 H 0.06 0.75 5.14 -27.65 -0.14 0.60 16 30 H 0.10 1.49 6.44 -51.93 -0.33 1.16 16 31 H 0.16 2.16 8.05 -52.49 -0.42 1.74 16 32 H 0.15 1.75 8.04 -52.48 -0.42 1.33 16 33 H 0.40 2.32 7.93 -40.82 -0.32 1.99 16 34 H 0.41 2.42 8.93 -40.82 -0.36 2.05 16 LS Contribution 301.95 15.07 4.55 4.55 Total: -1.00 -32.17 301.95 -6.32 -38.49 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.38 Total: 3.34 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.22 Total: 0.97 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.41 Total: -42.28 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.18 Total: -20.95 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.84 Total: 0.64 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.17 -6.32 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550031.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.777 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds