Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38325 * 119.92262 * 2 1 4 4 C 1.38061 * 120.08138 * 179.97438 * 3 2 1 5 5 C 1.38996 * 119.91928 * 0.02562 * 4 3 2 6 6 S 1.76197 * 120.07924 * 180.02562 * 5 4 3 7 7 C 1.81399 * 103.00045 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.46810 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 6 10 10 S 1.80994 * 109.47387 * 180.02562 * 9 8 7 11 11 C 1.76194 * 100.00276 * 179.97438 * 10 9 8 12 12 H 1.08011 * 120.00031 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00539 * 179.97438 * 11 10 9 14 14 N 1.31631 * 119.99522 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00399 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46904 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47412 * 120.00117 * 15 13 11 18 18 H 1.48502 * 109.47207 * 240.00174 * 15 13 11 19 19 C 1.38955 * 119.83977 * 0.27900 * 5 4 3 20 20 C 1.50701 * 120.04300 * 179.72386 * 19 5 4 21 21 C 1.38104 * 119.91975 * 359.40301 * 19 5 4 22 22 H 1.08990 * 109.46870 * 90.00024 * 1 2 3 23 23 H 1.09001 * 109.46814 * 210.00337 * 1 2 3 24 24 H 1.08997 * 109.46790 * 330.00145 * 1 2 3 25 25 H 1.07994 * 119.95593 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.03857 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.47070 * 300.00113 * 7 6 5 28 28 H 1.09001 * 109.46593 * 60.00110 * 7 6 5 29 29 H 1.09000 * 109.47486 * 299.99969 * 8 7 6 30 30 H 1.09001 * 109.47362 * 60.00691 * 8 7 6 31 31 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 32 32 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 33 33 H 0.96995 * 119.99998 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47384 * 89.99539 * 20 19 5 35 35 H 1.08997 * 109.47284 * 210.00318 * 20 19 5 36 36 H 1.09004 * 109.46893 * 330.00011 * 20 19 5 37 37 H 1.07995 * 119.96272 * 180.31781 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1989 0.0000 4 6 3.5776 1.2027 0.0005 5 6 4.2743 -0.0001 0.0005 6 16 6.0362 -0.0001 0.0019 7 6 6.4443 1.7673 0.0022 8 6 7.9646 1.9397 0.0040 9 6 8.3089 3.4305 0.0049 10 16 10.1073 3.6344 0.0063 11 6 10.2158 5.3930 0.0064 12 1 9.3155 5.9897 0.0053 13 6 11.4583 6.0118 0.0079 14 7 12.5556 5.2846 0.0088 15 14 11.5733 7.8762 0.0087 16 1 10.2063 8.4564 0.0069 17 1 12.3013 8.3267 1.2221 18 1 12.3037 8.3276 -1.2029 19 6 3.5778 -1.2025 -0.0059 20 6 4.3284 -2.5092 -0.0122 21 6 2.1967 -1.1986 0.0003 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6551 2.1330 -0.0004 26 1 4.1157 2.1391 0.0001 27 1 6.0261 2.2370 -0.8881 28 1 6.0247 2.2369 0.8919 29 1 8.3825 1.4701 0.8946 30 1 8.3846 1.4700 -0.8855 31 1 7.8910 3.9004 -0.8854 32 1 7.8889 3.8998 0.8946 33 1 13.4238 5.7170 0.0094 34 1 4.5091 -2.8295 1.0139 35 1 3.7380 -3.2649 -0.5302 36 1 5.2814 -2.3783 -0.5250 37 1 1.6548 -2.1327 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174006734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = -10.980867 kcal Electronic energy + Delta-G solvation = -16222.525451 eV Core-core repulsion = 13601.761972 eV Total energy + Delta-G solvation = -2620.763479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53496 -34.48074 -33.73440 -32.45775 -32.27758 -27.63709 -27.36940 -26.71792 -25.49481 -22.48842 -21.65095 -20.74154 -17.54928 -17.47867 -16.01917 -15.48946 -15.32685 -14.92925 -14.82233 -14.34721 -14.12243 -13.78103 -13.47290 -13.28613 -13.08096 -12.77934 -12.74184 -12.27646 -11.95842 -11.93932 -11.79995 -11.41762 -11.17312 -11.10750 -10.82183 -10.65810 -10.62077 -10.08065 -9.59696 -9.58833 -9.09169 -8.95398 -8.34860 -7.37938 -6.56697 -6.25453 -3.96287 1.02724 1.17225 1.49532 2.44004 3.19556 3.20572 3.28586 3.44948 3.53151 4.19200 4.52591 4.63353 4.67902 4.97536 5.02887 5.05314 5.09774 5.10949 5.27411 5.31107 5.36636 5.40133 5.45463 5.49761 5.55858 5.65091 5.72085 5.77904 5.88939 5.99196 6.08659 6.19843 6.26570 6.38037 6.42802 6.62817 6.74515 7.58342 8.34181 9.20949 10.82806 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.002727 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.676538 B =10264.863482 C =11044.182077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.107 4.107 4 C -0.126 4.126 5 C -0.088 4.088 6 S -0.110 6.110 7 C -0.103 4.103 8 C -0.083 4.083 9 C -0.110 4.110 10 S -0.128 6.128 11 C -0.516 4.516 12 H 0.073 0.927 13 C 0.070 3.930 14 N -0.869 5.869 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.066 4.066 20 C -0.117 4.117 21 C -0.106 4.106 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.267 0.733 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.694 -12.545 -0.030 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.150 4.150 5 C -0.201 4.201 6 S 0.136 5.864 7 C -0.253 4.253 8 C -0.122 4.122 9 C -0.260 4.260 10 S 0.100 5.900 11 C -0.665 4.665 12 H 0.091 0.909 13 C -0.138 4.138 14 N -0.504 5.504 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.073 4.073 20 C -0.174 4.174 21 C -0.126 4.126 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.761 -14.206 -0.028 24.337 hybrid contribution -1.776 3.312 -0.005 3.758 sum -21.537 -10.894 -0.033 24.135 Atomic orbital electron populations 1.20763 0.91159 1.02683 1.02233 1.19902 0.96036 0.93081 1.00724 1.20907 0.93582 0.97633 1.00575 1.21216 0.94837 0.96758 1.02180 1.21742 0.97352 0.95838 1.05147 1.85493 0.98023 1.11250 1.91671 1.23864 1.01804 0.94242 1.05398 1.21038 0.90450 0.96759 1.03995 1.23257 1.03312 0.96335 1.03095 1.84674 0.97658 1.10824 1.96862 1.22721 0.95223 0.89995 1.58533 0.90870 1.25026 0.94806 0.99431 0.94573 1.70029 0.97666 1.35543 1.47204 0.86098 0.78327 0.83093 0.77914 1.19610 1.20537 1.20542 1.19539 0.93474 0.93812 1.00425 1.20806 1.00274 0.93483 1.02793 1.20824 0.92878 0.97613 1.01246 0.91263 0.91624 0.91604 0.85927 0.85654 0.89547 0.89527 0.90468 0.90475 0.91912 0.91905 0.92307 0.90723 0.91305 0.90695 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.09 -0.90 5.88 -104.57 -0.62 -1.52 16 3 C -0.11 -1.11 9.69 -39.61 -0.38 -1.49 16 4 C -0.13 -1.49 9.36 -39.37 -0.37 -1.85 16 5 C -0.09 -1.10 6.11 -39.03 -0.24 -1.34 16 6 S -0.11 -1.45 20.13 -107.50 -2.16 -3.61 16 7 C -0.10 -1.39 4.33 37.16 0.16 -1.22 16 8 C -0.08 -1.34 5.22 -26.73 -0.14 -1.48 16 9 C -0.11 -2.17 5.67 37.16 0.21 -1.96 16 10 S -0.13 -3.34 21.44 -107.50 -2.30 -5.64 16 11 C -0.52 -14.74 9.50 30.94 0.29 -14.44 16 12 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 13 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 14 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 15 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.07 -0.74 5.90 -104.41 -0.62 -1.36 16 20 C -0.12 -1.08 9.57 36.01 0.34 -0.74 16 21 C -0.11 -1.04 9.35 -39.61 -0.37 -1.41 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 24 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 25 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.13 1.40 5.88 -52.49 -0.31 1.09 16 27 H 0.09 1.10 7.75 -51.92 -0.40 0.70 16 28 H 0.09 1.10 7.75 -51.92 -0.40 0.70 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.07 0.76 6.79 -51.93 -0.35 0.40 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -31.03 335.26 -10.81 -41.85 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.65 Total: -1.64 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -1.46 Total: -27.28 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.73 Total: -25.18 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -4.47 Total: -9.26 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.03 -10.81 -41.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174006734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.865 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds