Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00466 * 2 1 4 4 H 1.48505 * 109.46879 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47106 * 119.99654 * 3 2 1 6 6 H 1.48497 * 109.47124 * 239.99943 * 3 2 1 7 7 C 1.37878 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00259 * 185.67910 * 7 2 1 9 9 C 1.50706 * 120.00013 * 5.68959 * 7 2 1 10 10 C 1.53002 * 115.54586 * 275.21634 * 9 7 2 11 11 O 1.45196 * 109.47373 * 301.66621 * 10 9 7 12 12 C 1.34726 * 117.00174 * 184.90099 * 11 10 9 13 13 O 1.21497 * 119.99740 * 5.09241 * 12 11 10 14 14 C 1.47568 * 120.00235 * 185.08637 * 12 11 10 15 15 C 1.39739 * 120.16097 * 5.20580 * 14 12 11 16 16 C 1.37821 * 119.92348 * 180.02562 * 15 14 12 17 17 C 1.38470 * 120.24604 * 359.97438 * 16 15 14 18 18 C 1.38384 * 120.32135 * 0.04349 * 17 16 15 19 19 F 1.35105 * 119.95411 * 179.97438 * 18 17 16 20 20 C 1.38533 * 120.08015 * 359.67846 * 18 17 16 21 21 F 1.35105 * 120.12782 * 180.29951 * 20 18 17 22 22 C 1.53000 * 117.50191 * 129.54855 * 9 7 2 23 23 C 1.52995 * 117.50137 * 60.88546 * 9 7 2 24 24 H 0.96992 * 120.00325 * 175.11500 * 1 2 3 25 25 H 1.09006 * 109.47152 * 61.67398 * 10 9 7 26 26 H 1.09005 * 109.46726 * 181.66755 * 10 9 7 27 27 H 1.08004 * 120.04228 * 0.02562 * 15 14 12 28 28 H 1.07997 * 119.87754 * 180.02562 * 16 15 14 29 29 H 1.07991 * 119.83866 * 180.02562 * 17 16 15 30 30 H 1.09002 * 117.49231 * 359.97438 * 22 9 7 31 31 H 1.08996 * 117.49921 * 145.01735 * 22 9 7 32 32 H 1.08999 * 117.50600 * 214.98193 * 23 9 7 33 33 H 1.09003 * 117.49905 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2126 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0805 -1.1965 0.0931 9 6 1.2564 -2.4961 -0.1283 10 6 0.7025 -3.0707 1.1771 11 8 1.7915 -3.2802 2.1143 12 6 1.4867 -3.8788 3.2822 13 8 0.3633 -4.2998 3.4740 14 6 2.5174 -4.0234 4.3283 15 6 3.7782 -3.4459 4.1562 16 6 4.7374 -3.5844 5.1362 17 6 4.4565 -4.2937 6.2918 18 6 3.2115 -4.8701 6.4726 19 9 2.9456 -5.5609 7.6028 20 6 2.2355 -4.7343 5.4988 21 9 1.0177 -5.2915 5.6770 22 6 1.7421 -3.4882 -1.1869 23 6 0.4372 -2.7172 -1.4013 24 1 -0.4850 -0.8369 -0.0715 25 1 -0.0164 -2.3721 1.6054 26 1 0.2091 -4.0214 0.9750 27 1 4.0008 -2.8916 3.2564 28 1 5.7114 -3.1375 5.0027 29 1 5.2128 -4.3978 7.0556 30 1 2.6024 -3.1989 -1.7906 31 1 1.6666 -4.5502 -0.9537 32 1 -0.4963 -3.2723 -1.3091 33 1 0.4388 -1.9208 -2.1456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174733423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -126.458178 kcal Electronic energy + Delta-G solvation = -21560.276290 eV Core-core repulsion = 17802.078987 eV Total energy + Delta-G solvation = -3758.197303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.60915 -48.66440 -40.15090 -38.63620 -37.06307 -35.48005 -31.96156 -31.64352 -30.59949 -27.20408 -25.00223 -24.42858 -22.94642 -21.49523 -20.97595 -19.61518 -18.42001 -17.61027 -17.33489 -16.83574 -16.54641 -16.42131 -15.72662 -15.58836 -15.02927 -15.01768 -14.46158 -14.13691 -13.78264 -13.34993 -13.15923 -12.73342 -12.57953 -12.29208 -12.09321 -11.93642 -11.84025 -11.02414 -10.86317 -10.57338 -10.27963 -10.16377 -10.10910 -9.67313 -9.39678 -8.99417 -8.62614 -8.55033 -8.43371 -6.42001 -4.16601 0.27990 0.69116 2.50909 2.83542 3.35894 3.39070 3.40191 3.57992 3.59430 4.10541 4.34002 4.45498 4.47134 4.70781 4.82990 5.04889 5.24814 5.40703 5.46202 5.65198 5.71666 5.85378 5.91472 5.98694 6.04330 6.22030 6.34163 6.41862 6.48871 6.73221 6.87382 7.09928 7.15933 8.07343 8.17795 8.34979 8.78718 9.57598 10.96864 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.004751 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.893798 B = 5891.736126 C = 6534.910971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.564 4.564 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.112 3.888 11 O -0.321 6.321 12 C 0.497 3.503 13 O -0.503 6.503 14 C -0.127 4.127 15 C -0.038 4.038 16 C -0.115 4.115 17 C -0.096 4.096 18 C 0.050 3.950 19 F -0.127 7.127 20 C 0.127 3.873 21 F -0.105 7.105 22 C -0.190 4.190 23 C -0.168 4.168 24 H 0.273 0.727 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.163 0.837 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.781 -7.428 9.728 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.602 4.602 8 H 0.075 0.925 9 C 0.012 3.988 10 C 0.039 3.961 11 O -0.236 6.236 12 C 0.341 3.659 13 O -0.393 6.393 14 C -0.129 4.129 15 C -0.056 4.056 16 C -0.133 4.133 17 C -0.115 4.115 18 C 0.029 3.971 19 F -0.105 7.105 20 C 0.106 3.894 21 F -0.083 7.083 22 C -0.227 4.227 23 C -0.205 4.205 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.181 0.819 28 H 0.168 0.832 29 H 0.168 0.832 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.153 -5.941 9.838 14.692 hybrid contribution -0.344 -2.015 0.189 2.053 sum 8.809 -7.957 10.027 15.538 Atomic orbital electron populations 1.70763 1.06815 1.31460 1.44922 1.25838 0.96526 1.02419 0.93242 0.83559 0.74946 0.75320 0.76603 1.20791 1.21365 1.21341 1.21180 0.94187 0.89115 1.55684 0.92508 1.19068 0.99539 0.95882 0.84296 1.22977 0.86272 0.98212 0.88625 1.86576 1.41948 1.69927 1.25116 1.20698 0.86540 0.76042 0.82656 1.90866 1.22354 1.46122 1.79937 1.19247 0.96044 1.04211 0.93376 1.21701 0.89856 0.94174 0.99851 1.21135 1.00646 0.99011 0.92516 1.21334 0.94513 0.96327 0.99339 1.17437 0.94620 1.00561 0.84442 1.91545 1.94348 1.76981 1.47630 1.17681 0.81403 0.96556 0.93764 1.91627 1.39678 1.82030 1.94950 1.22923 0.98003 0.95582 1.06206 1.22798 0.93305 1.02389 1.02026 0.91577 0.91267 0.93644 0.81949 0.83203 0.83153 0.89673 0.91278 0.91190 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.98 13.57 55.43 0.75 -25.23 16 2 C 0.03 0.68 5.39 -17.82 -0.10 0.59 16 3 Si 1.07 23.95 29.91 -169.99 -5.08 18.87 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.56 -14.91 8.65 -34.44 -0.30 -15.20 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.01 0.30 1.22 -155.66 -0.19 0.11 16 10 C 0.11 2.58 5.37 37.16 0.20 2.78 16 11 O -0.32 -6.86 9.30 -40.56 -0.38 -7.24 16 12 C 0.50 9.84 7.88 34.54 0.27 10.11 16 13 O -0.50 -11.18 15.05 -19.26 -0.29 -11.47 16 14 C -0.13 -1.98 5.88 -104.94 -0.62 -2.60 16 15 C -0.04 -0.46 9.61 -39.17 -0.38 -0.84 16 16 C -0.12 -1.01 10.02 -39.65 -0.40 -1.40 16 17 C -0.10 -0.85 10.01 -39.44 -0.39 -1.24 16 18 C 0.05 0.60 7.30 -39.42 -0.29 0.31 16 19 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 20 C 0.13 1.91 7.29 -38.88 -0.28 1.62 16 21 F -0.10 -1.83 15.48 2.25 0.03 -1.79 16 22 C -0.19 -3.98 9.94 -26.69 -0.27 -4.24 16 23 C -0.17 -3.71 8.66 -26.70 -0.23 -3.94 16 24 H 0.27 7.77 6.18 -40.82 -0.25 7.51 16 25 H 0.07 1.73 7.88 -51.93 -0.41 1.32 16 26 H 0.05 0.98 7.94 -51.93 -0.41 0.57 16 27 H 0.16 2.00 7.62 -52.48 -0.40 1.60 16 28 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -30.91 305.15 -6.51 -37.42 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.22 Total: 0.31 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.97 Total: -13.94 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.75 Total: -25.23 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.67 Total: -18.70 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.08 Total: 18.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.91 -6.51 -37.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174733423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.036 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds