Wall clock time and date at job start Tue Mar 31 2020 06:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31689 * 119.70882 * 2 1 4 4 C 1.32042 * 121.85882 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 119.47541 * 180.02562 * 4 3 2 6 6 C 1.38557 * 121.04705 * 359.97438 * 4 3 2 7 7 C 1.38255 * 119.29393 * 0.02562 * 6 4 3 8 8 C 1.39522 * 119.70764 * 180.02562 * 2 1 3 9 9 C 1.47778 * 120.54215 * 359.70125 * 8 2 1 10 10 O 1.21557 * 120.00184 * 354.01773 * 9 8 2 11 11 N 1.34783 * 119.99422 * 174.01881 * 9 8 2 12 12 C 1.46503 * 119.99767 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47111 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46948 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46754 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00037 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99381 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00300 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99729 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46742 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47121 * 120.00259 * 19 17 15 22 22 H 1.48499 * 109.47420 * 240.00574 * 19 17 15 23 23 H 1.09000 * 109.47211 * 263.45716 * 1 2 3 24 24 H 1.09005 * 109.47141 * 23.45514 * 1 2 3 25 25 H 1.09009 * 109.47305 * 143.45276 * 1 2 3 26 26 H 1.07997 * 120.35018 * 179.97438 * 6 4 3 27 27 H 1.08000 * 120.84287 * 180.02562 * 7 6 4 28 28 H 0.96991 * 120.00406 * 0.02562 * 11 9 8 29 29 H 1.09000 * 109.47177 * 300.00310 * 12 11 9 30 30 H 1.09004 * 109.46831 * 60.00034 * 12 11 9 31 31 H 1.08992 * 109.46845 * 299.99762 * 13 12 11 32 32 H 1.09002 * 109.46752 * 60.00239 * 13 12 11 33 33 H 1.09000 * 109.47226 * 300.00214 * 14 13 12 34 34 H 1.09004 * 109.46946 * 60.00038 * 14 13 12 35 35 H 0.97003 * 119.99532 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1438 0.0000 4 6 3.4791 1.1933 -0.0005 5 17 4.2760 2.7356 0.0002 6 6 4.2378 0.0339 -0.0005 7 6 3.5992 -1.1923 -0.0005 8 6 2.1984 -1.2118 -0.0005 9 6 1.4651 -2.4948 0.0055 10 8 0.2551 -2.5028 0.1207 11 7 2.1382 -3.6562 -0.1167 12 6 1.4114 -4.9282 -0.1101 13 6 2.4033 -6.0831 -0.2619 14 6 1.6441 -7.4115 -0.2557 15 6 2.6211 -8.5491 -0.4059 16 1 3.6777 -8.3450 -0.4963 17 6 2.1659 -9.8504 -0.4268 18 7 0.8792 -10.0989 -0.3163 19 14 3.3769 -11.2606 -0.6123 20 1 4.7556 -10.7185 -0.7165 21 1 3.2841 -12.1518 0.5720 22 1 3.0540 -12.0324 -1.8392 23 1 -0.3633 -0.1171 1.0210 24 1 -0.3634 0.9428 -0.4091 25 1 -0.3634 -0.8256 -0.6120 26 1 5.3164 0.0875 -0.0014 27 1 4.1659 -2.1117 -0.0001 28 1 3.1038 -3.6499 -0.2082 29 1 0.8725 -5.0339 0.8314 30 1 0.7028 -4.9460 -0.9383 31 1 2.9424 -5.9776 -1.2033 32 1 3.1115 -6.0651 0.5665 33 1 1.1045 -7.5173 0.6854 34 1 0.9361 -7.4293 -1.0844 35 1 0.5591 -11.0145 -0.3307 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178527556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:55 Heat of formation + Delta-G solvation = -24.764909 kcal Electronic energy + Delta-G solvation = -18626.711928 eV Core-core repulsion = 15457.013807 eV Total energy + Delta-G solvation = -3169.698121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09781 -39.16072 -37.07313 -35.69084 -33.89103 -33.09771 -32.57752 -31.17102 -28.27111 -26.72758 -24.80653 -23.28895 -22.49422 -20.96189 -20.36053 -17.92900 -17.50985 -16.85833 -16.32538 -15.78142 -15.50253 -14.95804 -14.76498 -14.46280 -13.92426 -13.81156 -13.66952 -13.02644 -12.98118 -12.39168 -12.20354 -11.91112 -11.86707 -11.76838 -11.71490 -10.96915 -10.82148 -10.61784 -10.36376 -10.26466 -9.95457 -9.84485 -9.43886 -9.33117 -9.16511 -8.89016 -8.42553 -6.06939 -4.10267 0.12902 0.67475 1.32981 2.59752 3.10233 3.26489 3.34358 3.37398 3.38065 3.91896 4.22695 4.33816 4.39786 4.42341 4.66513 5.07294 5.29151 5.29418 5.39088 5.58174 5.59632 5.67040 5.72945 5.81188 6.05499 6.16677 6.36567 6.49644 6.70440 6.90891 7.25616 7.48687 7.57505 7.69051 7.91341 8.13275 8.32235 8.96551 9.54392 11.04328 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034506 B = 0.002668 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.267622 B =10493.518975 C =11269.764103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.209 3.791 3 N -0.485 5.485 4 C 0.199 3.801 5 Cl -0.027 7.027 6 C -0.170 4.170 7 C -0.026 4.026 8 C -0.184 4.184 9 C 0.557 3.443 10 O -0.526 6.526 11 N -0.717 5.717 12 C 0.116 3.884 13 C -0.122 4.122 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 22.523 0.529 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 N -0.197 5.197 4 C 0.034 3.966 5 Cl 0.002 6.998 6 C -0.191 4.191 7 C -0.052 4.052 8 C -0.190 4.190 9 C 0.343 3.657 10 O -0.405 6.405 11 N -0.368 5.368 12 C -0.006 4.006 13 C -0.160 4.160 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.127 0.873 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.232 0.768 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.225 23.252 0.615 23.840 hybrid contribution 1.821 -1.411 -0.109 2.306 sum 7.046 21.841 0.506 22.955 Atomic orbital electron populations 1.21131 0.86562 1.04300 1.04773 1.21455 0.97660 0.85271 0.88577 1.66983 1.08075 1.29842 1.14783 1.21905 0.90051 0.87834 0.96796 1.98422 1.76834 1.28396 1.96155 1.21759 1.02024 0.90797 1.04505 1.21819 0.93181 0.98550 0.91691 1.20997 0.94388 0.95657 1.07933 1.17853 0.87153 0.83241 0.77502 1.90752 1.13317 1.86934 1.49456 1.46145 1.10992 1.06421 1.73237 1.21738 0.95712 0.80801 1.02366 1.21907 0.97829 0.95383 1.00849 1.19035 0.95536 0.89105 0.97725 1.21224 0.93522 0.91064 1.50317 0.92592 1.25033 0.95146 0.99042 0.95246 1.69972 1.12938 1.20017 1.50278 0.86528 0.81333 0.82350 0.77726 1.19757 1.20976 1.20969 0.89356 0.90968 0.87310 0.82976 0.83075 0.76849 0.91345 0.91336 0.92648 0.92655 0.96213 0.96210 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.87 36.01 0.32 -0.92 16 2 C 0.21 2.50 6.82 -82.17 -0.56 1.94 16 3 N -0.49 -5.81 10.24 -6.28 -0.06 -5.87 16 4 C 0.20 2.02 7.27 -17.34 -0.13 1.90 16 5 Cl -0.03 -0.24 29.10 -51.86 -1.51 -1.75 16 6 C -0.17 -1.37 9.86 -39.46 -0.39 -1.76 16 7 C -0.03 -0.22 9.63 -38.88 -0.37 -0.60 16 8 C -0.18 -2.09 5.89 -104.82 -0.62 -2.71 16 9 C 0.56 7.56 7.70 -12.36 -0.10 7.46 16 10 O -0.53 -8.62 13.37 5.32 0.07 -8.54 16 11 N -0.72 -9.21 5.51 -61.27 -0.34 -9.54 16 12 C 0.12 1.87 5.67 -4.04 -0.02 1.84 16 13 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.11 1.35 5.86 -51.92 -0.30 1.05 16 26 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 27 H 0.15 0.85 6.57 -52.49 -0.34 0.50 16 28 H 0.40 3.92 6.62 -40.82 -0.27 3.65 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 317.17 15.07 4.78 4.78 Total: -1.00 -31.29 317.17 -8.17 -39.46 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.26 Total: -1.22 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.56 Total: -7.78 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.33 Total: -40.97 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.51 Total: -1.75 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.29 -8.17 -39.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178527556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.692 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds