Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38130 * 119.54107 * 2 1 4 4 C 1.39829 * 119.03103 * 180.02562 * 3 2 1 5 5 C 1.48151 * 120.91688 * 180.02562 * 4 3 2 6 6 O 1.21516 * 119.99350 * 359.96924 * 5 4 3 7 7 N 1.34771 * 120.00358 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00354 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47273 * 179.97438 * 8 7 5 10 10 C 1.53000 * 109.47204 * 179.97438 * 9 8 7 11 11 C 1.50691 * 109.47433 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00324 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00294 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99733 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00033 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47036 * 90.00188 * 15 13 11 17 17 H 1.48501 * 109.46693 * 210.00226 * 15 13 11 18 18 H 1.48503 * 109.47098 * 329.99629 * 15 13 11 19 19 C 1.39788 * 118.17027 * 359.97438 * 4 3 2 20 20 C 1.38304 * 118.98879 * 0.28476 * 19 4 3 21 21 Cl 1.73596 * 119.56774 * 179.69947 * 20 19 4 22 22 N 1.31823 * 119.53861 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47343 * 89.99925 * 1 2 3 24 24 H 1.09005 * 109.46781 * 209.99367 * 1 2 3 25 25 H 1.09000 * 109.47225 * 329.99590 * 1 2 3 26 26 H 1.07993 * 120.48455 * 0.04920 * 3 2 1 27 27 H 0.97001 * 119.99935 * 359.97438 * 7 5 4 28 28 H 1.08997 * 109.47022 * 299.99843 * 8 7 5 29 29 H 1.09001 * 109.47047 * 59.99172 * 8 7 5 30 30 H 1.09006 * 109.47162 * 299.99816 * 9 8 7 31 31 H 1.08993 * 109.46924 * 60.00228 * 9 8 7 32 32 H 1.08997 * 109.47082 * 300.00264 * 10 9 8 33 33 H 1.09001 * 109.47056 * 59.99635 * 10 9 8 34 34 H 0.96997 * 119.99431 * 179.97438 * 14 13 11 35 35 H 1.08002 * 120.50209 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.2017 0.0000 4 6 3.5863 1.1893 -0.0005 5 6 4.3588 2.4535 0.0000 6 8 3.7775 3.5206 0.0004 7 7 5.7061 2.4200 0.0000 8 6 6.4700 3.6701 0.0000 9 6 7.9667 3.3532 0.0006 10 6 8.7645 4.6588 -0.0001 11 6 10.2387 4.3467 0.0012 12 1 10.5734 3.3199 0.0027 13 6 11.1605 5.3721 0.0003 14 7 10.7530 6.6226 -0.0011 15 14 12.9880 4.9851 0.0011 16 1 13.4726 4.8812 -1.3987 17 1 13.7232 6.0696 0.7003 18 1 13.2210 3.6972 0.7027 19 6 4.2352 -0.0488 -0.0005 20 6 3.4749 -1.2041 -0.0060 21 17 4.2652 -2.7497 -0.0139 22 7 2.1569 -1.1469 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6485 2.1372 0.0008 27 1 6.1701 1.5681 0.0000 28 1 6.2209 4.2480 -0.8900 29 1 6.2208 4.2481 0.8899 30 1 8.2155 2.7755 0.8909 31 1 8.2160 2.7751 -0.8891 32 1 8.5157 5.2361 -0.8905 33 1 8.5152 5.2373 0.8894 34 1 11.4015 7.3439 -0.0014 35 1 5.3139 -0.1024 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180917614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -29.129649 kcal Electronic energy + Delta-G solvation = -18455.757802 eV Core-core repulsion = 15285.870412 eV Total energy + Delta-G solvation = -3169.887390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03558 -39.29820 -37.05172 -35.63363 -33.91881 -33.17113 -32.64414 -31.18638 -28.12287 -27.14302 -24.80622 -23.32180 -22.79871 -20.90068 -20.15159 -18.17891 -17.28137 -16.37490 -16.12863 -15.96082 -15.68351 -15.19319 -15.09306 -14.48858 -14.23081 -13.96509 -13.54181 -13.34573 -12.73273 -12.40789 -12.31628 -11.94390 -11.90997 -11.74876 -11.66829 -10.94715 -10.83992 -10.66412 -10.48940 -10.30747 -10.00013 -9.95074 -9.48895 -9.29167 -9.17905 -9.00371 -8.41428 -6.06113 -4.09452 0.25777 0.45094 1.37870 2.59288 2.98699 3.28242 3.34801 3.34899 3.37527 3.80800 4.22930 4.39702 4.41145 4.48518 4.67804 4.89811 5.07123 5.18562 5.29906 5.35230 5.51501 5.56348 5.64654 5.65678 5.97892 6.04502 6.25066 6.49121 6.68810 6.90560 7.23766 7.41770 7.57812 7.69355 7.91998 8.04723 8.32891 8.97108 9.55131 11.05171 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024504 B = 0.002915 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.402401 B = 9602.089786 C =10713.435731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.114 4.114 4 C -0.064 4.064 5 C 0.552 3.448 6 O -0.527 6.527 7 N -0.713 5.713 8 C 0.115 3.885 9 C -0.122 4.122 10 C 0.024 3.976 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.133 4.133 20 C 0.177 3.823 21 Cl -0.024 7.024 22 N -0.467 5.467 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.157 0.843 27 H 0.399 0.601 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 -15.930 -0.021 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.134 4.134 4 C -0.075 4.075 5 C 0.337 3.663 6 O -0.404 6.404 7 N -0.364 5.364 8 C -0.007 4.007 9 C -0.160 4.160 10 C -0.013 4.013 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.155 4.155 20 C 0.013 3.987 21 Cl 0.005 6.995 22 N -0.180 5.180 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.175 0.825 27 H 0.234 0.766 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.045 -15.848 -0.012 24.776 hybrid contribution 1.962 -0.011 -0.021 1.962 sum -17.083 -15.859 -0.033 23.310 Atomic orbital electron populations 1.20789 0.87384 1.04198 1.03802 1.21220 0.97338 0.86527 0.94256 1.22242 0.93278 1.00373 0.97552 1.20497 0.94588 0.93343 0.99117 1.18012 0.82673 0.87887 0.77736 1.90801 1.69807 1.30419 1.49375 1.46165 1.05506 1.11376 1.73351 1.21779 0.92239 0.84225 1.02483 1.21918 0.90777 1.02246 1.01076 1.19025 0.94007 0.90579 0.97729 1.21187 0.91185 0.92718 1.51103 0.92611 1.25031 0.99133 0.95068 0.95205 1.69964 1.34250 0.98582 1.50451 0.86576 0.85179 0.78008 0.78131 1.20629 1.21179 1.19868 1.22033 1.01861 0.90593 1.00979 1.21467 0.89690 0.87732 0.99789 1.98428 1.77121 1.27548 1.96412 1.66718 1.08442 1.30548 1.12305 0.89700 0.89922 0.89863 0.82542 0.76558 0.91235 0.91238 0.92547 0.92556 0.96211 0.96207 0.92878 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.16 36.01 0.37 -0.26 16 2 C 0.14 1.36 6.78 -82.63 -0.56 0.80 16 3 C -0.11 -1.16 9.31 -39.03 -0.36 -1.52 16 4 C -0.06 -0.73 5.91 -104.65 -0.62 -1.35 16 5 C 0.55 7.76 7.80 -12.19 -0.10 7.67 16 6 O -0.53 -9.18 16.45 5.35 0.09 -9.09 16 7 N -0.71 -9.55 5.51 -61.16 -0.34 -9.89 16 8 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 9 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 10 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 11 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 12 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.13 -1.32 9.38 -38.98 -0.37 -1.69 16 20 C 0.18 1.87 7.27 -17.49 -0.13 1.75 16 21 Cl -0.02 -0.23 29.10 -51.86 -1.51 -1.73 16 22 N -0.47 -5.12 10.22 -6.66 -0.07 -5.19 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.16 1.45 7.74 -52.49 -0.41 1.04 16 27 H 0.40 4.24 6.61 -40.82 -0.27 3.97 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.15 1.17 6.54 -52.49 -0.34 0.83 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -31.95 322.67 -8.09 -40.04 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.36 Total: -1.66 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.48 Total: -7.81 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.33 Total: -40.78 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.73 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.95 -8.09 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180917614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.910 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds