Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47248 * 2 1 4 4 C 1.50707 * 109.46967 * 240.00097 * 2 1 3 5 5 H 1.07993 * 120.00375 * 245.65981 * 4 2 1 6 6 C 1.37881 * 119.99750 * 65.66511 * 4 2 1 7 7 N 1.31510 * 120.00124 * 197.75488 * 6 4 2 8 8 Si 1.86807 * 119.99966 * 18.02516 * 6 4 2 9 9 H 1.48505 * 109.46932 * 179.72576 * 8 6 4 10 10 H 1.48504 * 109.47086 * 299.72393 * 8 6 4 11 11 H 1.48496 * 109.47166 * 59.72810 * 8 6 4 12 12 N 1.46501 * 109.47463 * 120.00457 * 2 1 3 13 13 C 1.46500 * 120.00181 * 59.99695 * 12 2 1 14 14 C 1.34777 * 119.99963 * 239.99814 * 12 2 1 15 15 O 1.21373 * 120.00178 * 5.61352 * 14 12 2 16 16 C 1.49293 * 120.00068 * 185.61296 * 14 12 2 17 17 O 1.21411 * 119.99813 * 5.73568 * 16 14 12 18 18 N 1.34781 * 120.00101 * 185.73692 * 16 14 12 19 19 C 1.40375 * 120.00305 * 184.61715 * 18 16 14 20 20 C 1.38872 * 122.64275 * 327.09038 * 19 18 16 21 21 C 1.33321 * 114.90200 * 179.97438 * 20 19 18 22 22 S 1.75855 * 109.74298 * 0.02562 * 21 20 19 23 23 C 1.33946 * 122.64854 * 146.80294 * 19 18 16 24 24 H 1.09001 * 109.46423 * 294.32085 * 1 2 3 25 25 H 1.08992 * 109.47174 * 54.31996 * 1 2 3 26 26 H 1.09001 * 109.46715 * 174.32549 * 1 2 3 27 27 H 0.97003 * 119.99948 * 355.22529 * 7 6 4 28 28 H 1.09000 * 109.47076 * 95.65096 * 13 12 2 29 29 H 1.08997 * 109.46954 * 215.65498 * 13 12 2 30 30 H 1.09006 * 109.46764 * 335.64989 * 13 12 2 31 31 H 0.97005 * 120.00004 * 4.61740 * 18 16 14 32 32 H 1.07997 * 122.54899 * 0.02562 * 20 19 18 33 33 H 1.07997 * 125.13260 * 180.02562 * 21 20 19 34 34 H 1.08005 * 125.20905 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5757 -1.6387 -1.1342 6 6 1.7982 -0.1751 -2.4794 7 7 1.9119 -0.9300 -3.5503 8 14 1.3267 1.6243 -2.6509 9 1 1.1377 1.9518 -4.0871 10 1 0.0618 1.8769 -1.9150 11 1 2.4057 2.4746 -2.0872 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0029 1.1518 1.9455 16 6 3.3940 -0.7710 3.2354 17 8 3.2715 -1.9761 3.3168 18 7 4.0722 -0.0969 4.1853 19 6 4.7191 -0.7966 5.2160 20 6 4.2280 -1.9867 5.7364 21 6 4.9656 -2.5201 6.7106 22 16 6.3642 -1.5008 7.0227 23 6 5.8617 -0.3719 5.7712 24 1 -0.3632 0.4233 0.9365 25 1 -0.3633 0.5993 -0.8347 26 1 -0.3633 -1.0227 -0.1016 27 1 2.2273 -1.8436 -3.4684 28 1 2.4648 -2.7355 1.0601 29 1 1.5256 -2.2612 2.4959 30 1 0.7397 -2.3266 0.9001 31 1 4.1133 0.8719 4.1566 32 1 3.3183 -2.4458 5.3787 33 1 4.7384 -3.4394 7.2298 34 1 6.3924 0.5269 5.4939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190165193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = -14.335136 kcal Electronic energy + Delta-G solvation = -19802.907852 eV Core-core repulsion = 16635.705706 eV Total energy + Delta-G solvation = -3167.202146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84521 -38.92100 -37.34240 -35.88961 -33.86758 -32.76947 -30.30714 -29.34333 -26.49101 -25.43022 -24.69781 -23.33410 -21.33085 -19.41017 -19.26635 -17.91282 -17.67687 -17.34785 -16.46723 -15.91819 -15.64820 -15.17480 -14.26991 -14.00265 -13.73144 -13.33709 -13.16943 -13.04554 -12.82796 -12.70472 -12.60573 -12.06979 -11.82630 -11.72573 -11.36732 -11.13749 -10.88210 -10.56490 -10.39889 -9.98944 -9.82909 -9.17540 -9.09080 -8.86579 -8.40568 -8.16331 -7.94697 -6.56870 -4.21391 0.74411 1.40513 1.63555 1.72064 2.56607 2.78335 3.31790 3.43122 3.55073 3.56193 3.90902 4.39643 4.58789 4.78454 5.10982 5.15780 5.32195 5.65056 5.80343 5.89724 5.97431 6.09032 6.23356 6.33595 6.37254 6.46269 6.51928 6.83030 6.89711 7.12263 7.22410 7.65435 7.81572 8.07941 8.26217 8.40603 8.79759 9.47428 10.81712 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.037398 B = 0.003825 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.526450 B = 7318.281208 C = 7533.837927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.232 3.768 3 H 0.057 0.943 4 C -0.615 4.615 5 H 0.063 0.937 6 C 0.038 3.962 7 N -0.897 5.897 8 Si 1.040 2.960 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.278 1.278 12 N -0.546 5.546 13 C 0.088 3.912 14 C 0.496 3.504 15 O -0.538 6.538 16 C 0.511 3.489 17 O -0.498 6.498 18 N -0.641 5.641 19 C 0.140 3.860 20 C -0.128 4.128 21 C -0.204 4.204 22 S 0.114 5.886 23 C -0.255 4.255 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.269 0.731 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.423 0.577 32 H 0.157 0.843 33 H 0.169 0.831 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -0.546 20.154 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.131 3.869 3 H 0.075 0.925 4 C -0.653 4.653 5 H 0.081 0.919 6 C -0.168 4.168 7 N -0.530 5.530 8 Si 0.867 3.133 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.276 5.276 13 C -0.055 4.055 14 C 0.277 3.723 15 O -0.417 6.417 16 C 0.294 3.706 17 O -0.372 6.372 18 N -0.289 5.289 19 C 0.034 3.966 20 C -0.159 4.159 21 C -0.340 4.340 22 S 0.374 5.626 23 C -0.393 4.393 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.175 0.825 33 H 0.186 0.814 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.888 0.259 19.909 20.502 hybrid contribution -0.543 -0.832 0.036 0.994 sum 4.345 -0.573 19.945 20.421 Atomic orbital electron populations 1.22538 0.98015 1.01641 0.99947 1.19422 0.90983 0.94701 0.81812 0.92484 1.22145 1.41734 1.10711 0.90740 0.91885 1.25693 0.94317 1.05098 0.91709 1.70869 1.41052 1.09715 1.31328 0.84133 0.77469 0.75292 0.76370 1.20797 1.19791 1.20411 1.47979 1.45423 1.12790 1.21418 1.21906 1.01169 0.81123 1.01319 1.19607 0.81757 0.87198 0.83775 1.90715 1.61108 1.14474 1.75426 1.20782 0.78951 0.87701 0.83199 1.90711 1.56371 1.14094 1.75988 1.43092 1.50868 1.11269 1.23697 1.16800 0.92803 0.94928 0.92083 1.20249 1.03051 0.95851 0.96745 1.25505 0.99382 1.05039 1.04025 1.84128 1.26293 1.15916 1.36233 1.25273 1.00256 1.07535 1.06266 0.95209 0.91329 0.92824 0.92058 0.92486 0.90788 0.91050 0.73923 0.82518 0.81392 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.74 37.16 0.32 -3.14 16 2 C 0.23 5.54 2.21 -69.08 -0.15 5.38 16 3 H 0.06 1.45 5.56 -51.93 -0.29 1.16 16 4 C -0.62 -16.85 8.67 -34.44 -0.30 -17.15 16 5 H 0.06 1.86 7.80 -52.49 -0.41 1.45 16 6 C 0.04 1.08 5.34 -17.82 -0.10 0.98 16 7 N -0.90 -26.76 13.70 55.43 0.76 -26.00 16 8 Si 1.04 24.65 26.45 -169.99 -4.50 20.16 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.27 -5.84 5.51 56.52 0.31 -5.53 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.55 -11.63 2.75 -175.82 -0.48 -12.11 16 13 C 0.09 1.63 8.36 59.85 0.50 2.13 16 14 C 0.50 9.98 7.72 -11.66 -0.09 9.89 16 15 O -0.54 -11.72 15.84 5.48 0.09 -11.64 16 16 C 0.51 8.67 7.60 -11.66 -0.09 8.58 16 17 O -0.50 -8.76 10.99 5.44 0.06 -8.70 16 18 N -0.64 -8.90 5.39 -11.30 -0.06 -8.96 16 19 C 0.14 1.78 6.27 -85.22 -0.53 1.24 16 20 C -0.13 -1.57 8.86 -41.06 -0.36 -1.94 16 21 C -0.20 -2.01 11.21 29.02 0.33 -1.69 16 22 S 0.11 1.03 23.33 -107.50 -2.51 -1.48 16 23 C -0.25 -2.70 11.20 29.22 0.33 -2.37 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.48 4.84 -51.93 -0.25 1.23 16 26 H 0.05 1.10 6.89 -51.93 -0.36 0.74 16 27 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 28 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 29 H 0.07 1.23 5.99 -51.93 -0.31 0.92 16 30 H 0.07 1.29 6.55 -51.93 -0.34 0.95 16 31 H 0.42 5.19 8.33 -40.82 -0.34 4.85 16 32 H 0.16 2.07 6.49 -52.49 -0.34 1.73 16 33 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -31.03 297.89 -5.87 -36.90 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.57 Total: 5.41 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.15 Total: 1.93 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.21 Total: -47.07 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.15 Total: -20.34 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.50 Total: 20.16 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.03 -5.87 -36.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190165193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.561 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds