Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.41548 * 126.46278 * 308.41520 * 3 2 1 5 5 N 1.30262 * 108.46125 * 179.97438 * 4 3 2 6 6 N 1.39915 * 109.27724 * 359.97438 * 5 4 3 7 7 C 1.34781 * 125.86750 * 180.02562 * 6 5 4 8 8 O 1.21487 * 119.99701 * 174.52628 * 7 6 5 9 9 C 1.47713 * 120.00237 * 354.52289 * 7 6 5 10 10 C 1.40002 * 120.03723 * 6.59692 * 9 7 6 11 11 C 1.38306 * 120.35352 * 180.02562 * 10 9 7 12 12 C 1.37762 * 120.42054 * 0.02562 * 11 10 9 13 13 C 1.40758 * 120.05851 * 0.02562 * 12 11 10 14 14 C 1.41445 * 120.17351 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00336 * 34.46907 * 14 13 12 16 16 C 1.39945 * 119.99711 * 214.46803 * 14 13 12 17 17 N 1.30821 * 119.99950 * 356.00636 * 16 14 13 18 18 Si 1.86793 * 119.99792 * 176.00958 * 16 14 13 19 19 H 1.48504 * 109.47157 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47377 * 119.99861 * 18 16 14 21 21 H 1.48495 * 109.47269 * 239.99902 * 18 16 14 22 22 C 1.39090 * 120.03565 * 186.32753 * 9 7 6 23 23 C 1.36301 * 108.25738 * 0.26615 * 6 5 4 24 24 N 1.37872 * 126.53366 * 179.74166 * 23 6 5 25 25 H 1.08006 * 125.76985 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.81921 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.78476 * 180.02562 * 11 10 9 28 28 H 1.08005 * 119.97281 * 179.97438 * 12 11 10 29 29 H 0.97007 * 119.99757 * 179.97438 * 17 16 14 30 30 H 1.08002 * 120.20499 * 359.97438 * 22 9 7 31 31 H 0.97005 * 120.00012 * 359.97438 * 24 23 6 32 32 H 0.97000 * 119.99946 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.4096 -0.7063 0.8920 5 7 4.6483 -0.4561 0.5762 6 7 4.6791 0.4123 -0.5204 7 6 5.7884 0.8873 -1.1207 8 8 5.6935 1.5580 -2.1293 9 6 7.1196 0.5925 -0.5525 10 6 7.2409 -0.2915 0.5264 11 6 8.4840 -0.5719 1.0639 12 6 9.6169 0.0154 0.5449 13 6 9.5152 0.9077 -0.5390 14 6 10.6767 1.5125 -1.0734 15 1 11.6077 0.9658 -1.0978 16 6 10.6195 2.8193 -1.5707 17 7 9.4760 3.4534 -1.6134 18 14 12.1758 3.6581 -2.1737 19 1 13.3279 2.7339 -2.0193 20 1 12.0199 4.0207 -3.6052 21 1 12.4170 4.8867 -1.3753 22 6 8.2545 1.1885 -1.0922 23 6 3.3944 0.6996 -0.8738 24 7 2.9910 1.5235 -1.9030 25 1 3.0803 -1.3453 1.6981 26 1 6.3589 -0.7564 0.9416 27 1 8.5670 -1.2555 1.8958 28 1 10.5840 -0.2084 0.9705 29 1 9.4365 4.3595 -1.9578 30 1 8.1667 1.8674 -1.9275 31 1 3.6523 1.9652 -2.4584 32 1 2.0458 1.6621 -2.0712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195099665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = 101.837782 kcal Electronic energy + Delta-G solvation = -20514.048525 eV Core-core repulsion = 17248.732814 eV Total energy + Delta-G solvation = -3265.315710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.97600 -38.89764 -37.24600 -36.39697 -35.10627 -33.72690 -32.55678 -30.22460 -29.54697 -29.11382 -25.55072 -24.69492 -22.60977 -21.78980 -20.92164 -19.86661 -18.57985 -17.59490 -16.85755 -16.39704 -16.16924 -15.73847 -15.37206 -14.89817 -14.49484 -13.93298 -13.83943 -13.30783 -13.08785 -12.96283 -12.90533 -12.74206 -12.44291 -11.77660 -11.60038 -11.45200 -11.20597 -11.00238 -10.60033 -10.47584 -10.14185 -9.72856 -9.64328 -9.51069 -9.25296 -8.11769 -7.82182 -7.44591 -6.71597 -4.50589 0.91869 1.91901 2.04786 2.23528 2.67334 2.77115 3.05419 3.08586 3.11692 3.41661 3.44082 3.56897 3.91840 4.00823 4.52053 4.62055 4.78757 5.22582 5.34889 5.44592 5.92167 6.10602 6.28840 6.62042 6.65011 6.84458 6.89067 6.98937 7.16324 7.20277 7.27749 7.46755 7.64105 7.70979 7.76699 7.90938 8.01228 8.11000 8.43200 8.75234 8.80902 10.20947 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.004277 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.839823 B = 6545.644732 C = 7388.455270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.303 3.697 3 C -0.274 4.274 4 C 0.147 3.853 5 N -0.266 5.266 6 N -0.372 5.372 7 C 0.602 3.398 8 O -0.497 6.497 9 C -0.151 4.151 10 C -0.181 4.181 11 C -0.120 4.120 12 C -0.178 4.178 13 C 0.084 3.916 14 C -0.466 4.466 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.813 5.813 18 Si 0.917 3.083 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.070 4.070 23 C 0.450 3.550 24 N -0.815 5.815 25 H 0.202 0.798 26 H 0.150 0.850 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.280 0.720 30 H 0.143 0.857 31 H 0.424 0.576 32 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 -3.723 1.677 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.010 4.010 3 C -0.295 4.295 4 C -0.047 4.047 5 N -0.083 5.083 6 N -0.174 5.174 7 C 0.400 3.600 8 O -0.367 6.367 9 C -0.154 4.154 10 C -0.200 4.200 11 C -0.139 4.139 12 C -0.198 4.198 13 C 0.081 3.919 14 C -0.497 4.497 15 H 0.097 0.903 16 C -0.146 4.146 17 N -0.440 5.440 18 Si 0.742 3.258 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.090 4.090 23 C 0.218 3.782 24 N -0.362 5.362 25 H 0.218 0.782 26 H 0.167 0.833 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.260 0.740 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.329 -3.221 1.164 9.006 hybrid contribution 0.163 0.977 -0.677 1.200 sum -8.166 -2.244 0.488 8.483 Atomic orbital electron populations 1.81276 1.11477 1.10993 1.09481 1.24325 0.90930 0.92644 0.93134 1.15265 0.85659 1.19230 1.09393 1.24163 0.88858 0.95114 0.96568 1.77271 1.18593 1.10950 1.01479 1.47539 1.03392 1.39297 1.27174 1.19382 0.83469 0.75787 0.81318 1.90666 1.85777 1.36933 1.23355 1.19147 0.89036 1.05439 1.01785 1.21873 0.98707 1.01178 0.98252 1.20622 0.92936 1.00515 0.99798 1.21455 0.96980 1.03302 0.98034 1.17584 0.92878 0.91045 0.90353 1.19519 0.96269 0.98162 1.35720 0.90256 1.25880 0.97653 0.97744 0.93314 1.69696 1.25632 1.12553 1.36097 0.86118 0.81597 0.79365 0.78763 1.18551 1.19939 1.19957 1.21973 0.90252 0.97692 0.99099 1.18618 0.85375 0.87282 0.86959 1.42085 1.12400 1.49196 1.32496 0.78153 0.83281 0.88366 0.88287 0.90925 0.83902 0.73989 0.75071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.29 18.54 41.84 0.78 -5.52 16 2 C 0.30 3.71 15.57 -22.47 -0.35 3.36 16 3 C -0.27 -3.27 6.00 -106.39 -0.64 -3.91 16 4 C 0.15 1.62 11.98 -16.96 -0.20 1.41 16 5 N -0.27 -3.88 8.47 30.89 0.26 -3.62 16 6 N -0.37 -6.07 3.64 -11.80 -0.04 -6.11 16 7 C 0.60 11.94 7.80 -12.39 -0.10 11.85 16 8 O -0.50 -10.23 14.60 5.38 0.08 -10.15 16 9 C -0.15 -3.35 5.87 -105.05 -0.62 -3.97 16 10 C -0.18 -3.68 9.32 -38.90 -0.36 -4.04 16 11 C -0.12 -2.45 10.01 -39.73 -0.40 -2.84 16 12 C -0.18 -4.00 9.78 -38.80 -0.38 -4.38 16 13 C 0.08 2.10 5.55 -106.87 -0.59 1.51 16 14 C -0.47 -11.81 9.04 -37.72 -0.34 -12.16 16 15 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 16 C 0.07 1.69 5.42 -17.34 -0.09 1.60 16 17 N -0.81 -20.69 10.62 55.55 0.59 -20.10 16 18 Si 0.92 18.42 29.56 -169.99 -5.03 13.40 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 C -0.07 -1.75 8.21 -38.41 -0.32 -2.06 16 23 C 0.45 6.09 7.93 -152.67 -1.21 4.88 16 24 N -0.81 -9.13 8.97 31.60 0.28 -8.85 16 25 H 0.20 1.31 8.06 -52.48 -0.42 0.89 16 26 H 0.15 2.70 4.50 -58.74 -0.26 2.43 16 27 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 30 H 0.14 3.83 5.75 -52.49 -0.30 3.53 16 31 H 0.42 5.18 6.67 -40.82 -0.27 4.90 16 32 H 0.42 3.52 8.68 -40.82 -0.35 3.16 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -28.34 294.11 -6.25 -34.59 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -2.01 Total: 10.68 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -5.60 Total: -8.76 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 1.87 Total: -44.19 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.34 -6.25 -34.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195099665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.429 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds