Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48498 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47225 * 300.00207 * 3 2 1 6 6 H 1.48503 * 109.46967 * 60.00181 * 3 2 1 7 7 C 1.37879 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99640 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00044 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46780 * 180.02562 * 9 7 2 11 11 C 1.34788 * 119.99773 * 179.97438 * 10 9 7 12 12 O 1.21580 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99808 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99972 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47314 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47104 * 180.02562 * 15 14 13 17 17 C 1.38239 * 119.98824 * 270.29704 * 16 15 14 18 18 C 1.38212 * 120.01553 * 180.25745 * 17 16 15 19 19 C 1.38361 * 119.98341 * 359.46433 * 18 17 16 20 20 Cl 1.73597 * 120.00859 * 180.27890 * 19 18 17 21 21 C 1.38346 * 119.97306 * 0.25744 * 19 18 17 22 22 C 1.38210 * 119.98768 * 0.02562 * 21 19 18 23 23 H 0.97000 * 120.00622 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47189 * 60.00362 * 9 7 2 25 25 H 1.09001 * 109.47215 * 299.99845 * 9 7 2 26 26 H 0.97002 * 120.00700 * 0.02562 * 10 9 7 27 27 H 0.97009 * 119.99966 * 0.02562 * 13 11 10 28 28 H 1.09004 * 109.47279 * 59.99820 * 14 13 11 29 29 H 1.09000 * 109.47337 * 300.00462 * 14 13 11 30 30 H 1.08993 * 109.47106 * 60.00039 * 15 14 13 31 31 H 1.08996 * 109.46854 * 299.99697 * 15 14 13 32 32 H 1.08004 * 119.99430 * 359.97438 * 17 16 15 33 33 H 1.08002 * 120.01126 * 179.75014 * 18 17 16 34 34 H 1.08002 * 120.00348 * 180.02562 * 21 19 18 35 35 H 1.08002 * 119.99295 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5585 -5.1056 0.0000 13 7 2.6297 -5.9077 -0.0005 14 6 2.1415 -7.2889 -0.0005 15 6 3.3315 -8.2506 -0.0005 16 6 2.8292 -9.6714 -0.0012 17 6 2.5927 -10.3212 1.1958 18 6 2.1371 -11.6261 1.1960 19 6 1.9072 -12.2783 -0.0024 20 17 1.3280 -13.9148 -0.0030 21 6 2.1385 -11.6255 -1.2001 22 6 2.5997 -10.3226 -1.1988 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1568 -3.4354 -0.0002 27 1 3.5835 -5.7304 -0.0009 28 1 1.5355 -7.4602 -0.8903 29 1 1.5363 -7.4604 0.8896 30 1 3.9370 -8.0793 0.8894 31 1 3.9370 -8.0793 -0.8905 32 1 2.7684 -9.8106 2.1312 33 1 1.9562 -12.1350 2.1312 34 1 1.9588 -12.1340 -2.1358 35 1 2.7808 -9.8131 -2.1337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217308663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -29.248367 kcal Electronic energy + Delta-G solvation = -18210.658997 eV Core-core repulsion = 15040.766459 eV Total energy + Delta-G solvation = -3169.892538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -39.86194 -39.08956 -36.89961 -35.33395 -34.04569 -32.65184 -32.05749 -31.40670 -28.60237 -26.83374 -23.82297 -23.19281 -22.30457 -21.31699 -20.15019 -18.11272 -17.34713 -16.13772 -16.12545 -15.89382 -15.35603 -15.02976 -14.63952 -13.98185 -13.93430 -13.84461 -13.64824 -13.55693 -13.02883 -12.35245 -12.14824 -11.96724 -11.79430 -11.69324 -11.46055 -11.30052 -11.10668 -10.92062 -10.89317 -10.29890 -9.42423 -9.38169 -9.34443 -8.88816 -8.78666 -8.67565 -7.74968 -6.14703 -4.21196 0.77715 0.95673 1.81077 3.19532 3.24346 3.31057 3.33985 3.44735 3.96394 4.32851 4.39838 4.51477 4.56820 4.83196 4.91283 4.99121 5.17739 5.18440 5.21397 5.27096 5.48237 5.59146 5.82373 5.87725 5.89138 5.99288 6.24160 6.45458 6.84568 7.12559 7.52739 7.56318 7.58392 7.91627 8.05225 8.77693 8.95439 9.34369 9.49120 10.95597 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.060490 B = 0.002200 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.773644 B =12726.728523 C =12874.179487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.759 5.759 14 C 0.147 3.853 15 C -0.094 4.094 16 C -0.071 4.071 17 C -0.101 4.101 18 C -0.109 4.109 19 C -0.039 4.039 20 Cl -0.076 7.076 21 C -0.109 4.109 22 C -0.101 4.101 23 H 0.265 0.735 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.386 0.614 27 H 0.391 0.609 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 -24.320 -0.001 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.417 5.417 14 C 0.022 3.978 15 C -0.131 4.131 16 C -0.072 4.072 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.065 4.065 20 Cl -0.047 7.047 21 C -0.128 4.128 22 C -0.119 4.119 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.218 0.782 27 H 0.224 0.776 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.862 -24.498 -0.002 25.728 hybrid contribution 1.188 0.881 0.002 1.479 sum 9.050 -23.617 -0.001 25.292 Atomic orbital electron populations 1.69988 1.06085 1.27151 1.49043 1.24958 0.94924 0.99432 0.94814 0.86354 0.79777 0.82982 0.77723 1.19680 1.20826 1.20822 1.21267 0.93297 0.90433 1.52954 0.91892 1.18983 0.87803 0.81097 0.97613 1.45722 1.10769 1.04430 1.77278 1.16152 0.85196 0.81068 0.78416 1.90877 1.14284 1.84246 1.58557 1.45145 1.08823 1.05106 1.82651 1.20989 0.94954 0.79345 1.02494 1.20832 0.98034 0.90264 1.03999 1.19835 0.98515 0.95691 0.93162 1.21081 0.98687 0.93820 0.98295 1.21062 0.99770 0.95005 0.96924 1.20957 1.03390 0.86849 0.95349 1.98372 1.87349 1.19977 1.98973 1.21057 0.99736 0.95031 0.96934 1.21082 0.98677 0.93844 0.98281 0.92518 0.95741 0.95758 0.78174 0.77566 0.91805 0.91812 0.89966 0.89973 0.84819 0.84906 0.84906 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.17 5.43 -5.20 -0.03 7.14 16 10 N -0.73 -15.62 5.55 -66.42 -0.37 -15.99 16 11 C 0.69 14.29 8.57 -86.91 -0.74 13.55 16 12 O -0.60 -15.23 16.34 5.30 0.09 -15.14 16 13 N -0.76 -10.88 5.56 -65.22 -0.36 -11.24 16 14 C 0.15 1.81 5.66 -4.04 -0.02 1.79 16 15 C -0.09 -0.76 5.46 -27.88 -0.15 -0.91 16 16 C -0.07 -0.61 5.13 -104.62 -0.54 -1.14 16 17 C -0.10 -0.83 9.70 -39.59 -0.38 -1.21 16 18 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 19 C -0.04 -0.34 6.32 -39.50 -0.25 -0.59 16 20 Cl -0.08 -0.64 28.96 -51.86 -1.50 -2.15 16 21 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 22 C -0.10 -0.83 9.70 -39.59 -0.38 -1.21 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 27 H 0.39 4.27 8.49 -40.82 -0.35 3.92 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -33.56 324.62 -9.68 -43.24 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.44 Total: 4.66 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -3.70 Total: 1.39 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.00 Total: -52.73 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.56 -9.68 -43.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217308663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.993 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds