Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00241 * 2 1 4 4 H 1.48504 * 109.46842 * 269.99355 * 3 2 1 5 5 H 1.48503 * 109.47335 * 29.99155 * 3 2 1 6 6 H 1.48493 * 109.47680 * 149.99364 * 3 2 1 7 7 C 1.37876 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00078 * 0.02562 * 7 2 1 10 10 N 1.46490 * 109.47320 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00326 * 179.97438 * 10 9 7 12 12 O 1.21591 * 120.00000 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00462 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47473 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.38239 * 120.00487 * 100.00100 * 16 15 14 18 18 C 1.38220 * 120.01336 * 179.97438 * 17 16 15 19 19 C 1.38259 * 120.02394 * 0.03851 * 18 17 16 20 20 C 1.38197 * 120.01707 * 359.97438 * 19 18 17 21 21 C 1.38331 * 120.00622 * 279.72913 * 16 15 14 22 22 Cl 1.73596 * 120.01445 * 359.97409 * 21 16 15 23 23 H 0.97003 * 119.99893 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47180 * 59.99050 * 9 7 2 25 25 H 1.09004 * 109.46612 * 299.99845 * 9 7 2 26 26 H 0.97004 * 120.00364 * 359.97438 * 10 9 7 27 27 H 0.97004 * 120.00228 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.47129 * 59.99747 * 14 13 11 29 29 H 1.08998 * 109.46845 * 300.00553 * 14 13 11 30 30 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 31 31 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 32 32 H 1.08002 * 119.99356 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.98661 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.99473 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.00665 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1056 0.0020 13 7 2.6295 -5.9078 0.0005 14 6 2.1412 -7.2890 0.0005 15 6 3.3311 -8.2507 0.0005 16 6 2.8287 -9.6715 0.0012 17 6 2.7940 -10.3930 -1.1775 18 6 2.3337 -11.6963 -1.1770 19 6 1.9072 -12.2789 0.0020 20 6 1.9412 -11.5586 1.1809 21 6 2.4076 -10.2559 1.1822 22 17 2.4582 -9.3530 2.6640 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1566 -3.4355 0.0002 27 1 3.5832 -5.7306 0.0002 28 1 1.5352 -7.4602 -0.8892 29 1 1.5359 -7.4604 0.8907 30 1 3.9367 -8.0794 0.8905 31 1 3.9366 -8.0794 -0.8895 32 1 3.1265 -9.9382 -2.0989 33 1 2.3071 -12.2597 -2.0981 34 1 1.5472 -13.2972 0.0018 35 1 1.6083 -12.0140 2.1019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217376048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = -26.724902 kcal Electronic energy + Delta-G solvation = -18572.592830 eV Core-core repulsion = 15402.809717 eV Total energy + Delta-G solvation = -3169.783113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85746 -39.02931 -36.63329 -35.43442 -34.01182 -32.74179 -32.09265 -31.03314 -28.68367 -26.82613 -23.83891 -23.02831 -22.28302 -21.33477 -20.10084 -18.07243 -17.22565 -16.19890 -16.09703 -15.86896 -15.39918 -14.94270 -14.63326 -14.14297 -13.99403 -13.65228 -13.53271 -13.36416 -12.93461 -12.10639 -12.05650 -11.93340 -11.82052 -11.70087 -11.65939 -11.16991 -10.94342 -10.91268 -10.84320 -10.27026 -9.37563 -9.33359 -9.21446 -8.94019 -8.73014 -8.62481 -7.70343 -6.12025 -4.18408 0.83306 0.93186 1.93245 3.23868 3.26891 3.32653 3.35113 3.48266 4.02240 4.34522 4.42881 4.44691 4.64668 4.87304 4.97031 5.01222 5.17008 5.21575 5.23960 5.28224 5.47883 5.63519 5.82599 5.90026 6.05935 6.08545 6.16595 6.46665 6.90774 7.17223 7.56748 7.59959 7.61964 7.95611 8.08886 8.80805 9.00019 9.38504 9.52973 10.98307 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038095 B = 0.002780 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.828675 B =10071.300219 C =10297.288041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.693 3.307 12 O -0.601 6.601 13 N -0.757 5.757 14 C 0.148 3.852 15 C -0.097 4.097 16 C -0.068 4.068 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.032 4.032 22 Cl -0.061 7.061 23 H 0.265 0.735 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.386 0.614 27 H 0.391 0.609 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.135 -24.658 -0.084 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.415 5.415 14 C 0.023 3.977 15 C -0.134 4.134 16 C -0.069 4.069 17 C -0.120 4.120 18 C -0.133 4.133 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.059 4.059 22 Cl -0.032 7.032 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.218 0.782 27 H 0.224 0.776 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.813 -24.600 0.061 25.811 hybrid contribution 1.267 1.097 0.135 1.681 sum 9.080 -23.503 0.196 25.197 Atomic orbital electron populations 1.69985 1.06086 1.27219 1.49034 1.24949 0.94914 0.99391 0.94828 0.86413 0.79594 0.82697 0.78166 1.20499 1.21031 1.19796 1.21235 0.93255 0.90464 1.52981 0.91964 1.18971 0.87805 0.81078 0.97588 1.45701 1.10733 1.04417 1.77359 1.16139 0.85198 0.81041 0.78400 1.90875 1.14273 1.84249 1.58567 1.45107 1.08779 1.05048 1.82579 1.20962 0.94885 0.79327 1.02549 1.20860 0.98392 0.89995 1.04197 1.19605 0.99298 0.96142 0.91873 1.21095 0.99421 0.94314 0.97202 1.21256 0.98362 0.95222 0.98436 1.21125 0.99780 1.00118 0.92065 1.21074 0.99766 0.92570 0.99437 1.20907 1.03759 0.93421 0.87806 1.98397 1.96864 1.74602 1.33354 0.92489 0.95781 0.95763 0.78202 0.77619 0.91931 0.91536 0.89625 0.89839 0.84900 0.85350 0.85185 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.31 5.43 -5.20 -0.03 7.29 16 10 N -0.73 -16.05 5.55 -66.41 -0.37 -16.42 16 11 C 0.69 14.84 8.57 -86.92 -0.74 14.09 16 12 O -0.60 -15.65 16.34 5.29 0.09 -15.56 16 13 N -0.76 -11.66 5.56 -65.23 -0.36 -12.02 16 14 C 0.15 2.03 5.61 -4.04 -0.02 2.01 16 15 C -0.10 -0.95 4.92 -27.88 -0.14 -1.08 16 16 C -0.07 -0.66 5.14 -104.59 -0.54 -1.20 16 17 C -0.10 -0.84 9.67 -39.59 -0.38 -1.23 16 18 C -0.11 -0.83 10.05 -39.58 -0.40 -1.22 16 19 C -0.11 -0.81 10.05 -39.59 -0.40 -1.21 16 20 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 21 C -0.03 -0.33 6.31 -39.50 -0.25 -0.58 16 22 Cl -0.06 -0.67 26.65 -51.86 -1.38 -2.06 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 27 H 0.39 4.68 8.49 -40.82 -0.35 4.33 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.03 7.29 -51.93 -0.38 0.66 16 30 H 0.09 0.81 7.34 -51.93 -0.38 0.43 16 31 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 32 H 0.13 0.87 8.04 -52.49 -0.42 0.45 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -34.18 320.56 -9.54 -43.71 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.35 Total: 5.31 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -3.70 Total: 1.93 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.01 Total: -54.25 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.38 Total: -2.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.18 -9.54 -43.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217376048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.990 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds