Wall clock time and date at job start Tue Mar 31 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00028 * 2 1 4 4 H 1.48493 * 109.47268 * 269.99885 * 3 2 1 5 5 H 1.48509 * 109.46912 * 29.99735 * 3 2 1 6 6 H 1.48502 * 109.47306 * 149.99209 * 3 2 1 7 7 C 1.37878 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.34782 * 119.99616 * 180.02562 * 10 9 7 12 12 O 1.21591 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34769 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00060 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47299 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47142 * 180.02562 * 15 14 13 17 17 C 1.38270 * 119.99101 * 270.27596 * 16 15 14 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99998 * 16 15 14 23 23 H 0.97004 * 120.00538 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47173 * 59.99965 * 9 7 2 25 25 H 1.08994 * 109.47292 * 299.99766 * 9 7 2 26 26 H 0.96998 * 120.00326 * 0.02562 * 10 9 7 27 27 H 0.96998 * 120.00223 * 0.02562 * 13 11 10 28 28 H 1.09004 * 109.46563 * 59.99820 * 14 13 11 29 29 H 1.08998 * 109.47335 * 300.00100 * 14 13 11 30 30 H 1.08998 * 109.47471 * 59.99904 * 15 14 13 31 31 H 1.09000 * 109.47154 * 299.99767 * 15 14 13 32 32 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 34 34 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 35 35 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6297 -5.9076 0.0005 14 6 2.1414 -7.2889 0.0005 15 6 3.3314 -8.2505 0.0018 16 6 2.8291 -9.6714 0.0012 17 6 2.5920 -10.3212 1.1984 18 6 2.1368 -11.6262 1.1987 19 6 1.9074 -12.2787 0.0018 20 6 2.1390 -11.6273 -1.1962 21 17 1.8517 -12.4464 -2.6997 22 6 2.6002 -10.3227 -1.1959 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 3.1568 -3.4353 0.0009 27 1 3.5833 -5.7304 0.0017 28 1 1.5362 -7.4603 -0.8897 29 1 1.5355 -7.4601 0.8903 30 1 3.9363 -8.0790 0.8922 31 1 3.9377 -8.0795 -0.8877 32 1 2.7664 -9.8101 2.1337 33 1 1.9559 -12.1348 2.1342 34 1 1.5477 -13.2971 0.0022 35 1 2.7816 -9.8137 -2.1310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217469952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:45 Heat of formation + Delta-G solvation = -28.983215 kcal Electronic energy + Delta-G solvation = -18274.250026 eV Core-core repulsion = 15104.368985 eV Total energy + Delta-G solvation = -3169.881041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.86091 -39.08033 -36.84138 -35.38891 -34.04369 -32.74629 -32.11200 -31.06164 -28.75373 -26.86619 -23.89883 -23.01707 -22.31272 -21.36072 -20.14696 -18.11517 -17.17476 -16.13202 -16.12006 -15.90890 -15.53780 -15.02855 -14.65645 -14.15520 -13.98710 -13.66688 -13.60566 -13.44883 -12.94699 -12.29104 -12.11359 -11.95087 -11.80362 -11.75559 -11.53943 -11.25461 -11.12435 -10.94344 -10.86475 -10.29035 -9.42304 -9.35670 -9.22903 -8.98880 -8.77647 -8.66540 -7.74194 -6.13956 -4.20524 0.81972 0.91607 1.82062 3.20319 3.25602 3.31343 3.33661 3.44874 3.97238 4.32651 4.41102 4.46340 4.71048 4.84958 4.90961 4.94546 5.09519 5.19167 5.22070 5.31212 5.41879 5.60384 5.80356 5.88349 5.98046 6.01193 6.21071 6.45389 6.85205 7.13330 7.53333 7.56795 7.59162 7.92404 8.05979 8.78168 8.96203 9.35085 9.49820 10.96336 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.002377 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.785150 B =11775.146627 C =11996.794573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.759 5.759 14 C 0.147 3.853 15 C -0.093 4.093 16 C -0.063 4.063 17 C -0.109 4.109 18 C -0.106 4.106 19 C -0.116 4.116 20 C -0.033 4.033 21 Cl -0.073 7.073 22 C -0.105 4.105 23 H 0.266 0.734 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.386 0.614 27 H 0.391 0.609 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.176 -24.454 0.262 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.417 5.417 14 C 0.022 3.978 15 C -0.130 4.130 16 C -0.064 4.064 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.059 4.059 21 Cl -0.044 7.044 22 C -0.123 4.123 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.218 0.782 27 H 0.224 0.776 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.822 -24.554 0.126 25.770 hybrid contribution 1.229 0.955 -0.168 1.565 sum 9.051 -23.599 -0.042 25.276 Atomic orbital electron populations 1.69977 1.06095 1.27259 1.48967 1.24950 0.94914 0.99405 0.94801 0.86413 0.79585 0.82680 0.78187 1.20487 1.21021 1.19791 1.21227 0.93254 0.90448 1.53070 0.91955 1.18978 0.87798 0.81078 0.97611 1.45717 1.10764 1.04423 1.77275 1.16151 0.85199 0.81067 0.78418 1.90880 1.14273 1.84247 1.58561 1.45136 1.08824 1.05091 1.82649 1.20989 0.94931 0.79352 1.02515 1.20828 0.98069 0.90082 1.04062 1.19668 0.98648 0.95615 0.92508 1.21229 0.98662 0.94748 0.98038 1.21122 0.98767 0.94822 0.97664 1.21065 1.00895 1.00618 0.90855 1.20921 1.03806 0.93951 0.87253 1.98379 1.94740 1.78877 1.32403 1.21002 0.99554 0.92817 0.98956 0.92462 0.95758 0.95744 0.78177 0.77567 0.91797 0.91779 0.89832 0.89958 0.85114 0.84979 0.85052 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.18 16 10 N -0.73 -15.69 5.55 -66.41 -0.37 -16.05 16 11 C 0.69 14.38 8.57 -86.92 -0.74 13.64 16 12 O -0.60 -15.30 16.34 5.29 0.09 -15.21 16 13 N -0.76 -11.00 5.56 -65.22 -0.36 -11.36 16 14 C 0.15 1.84 5.66 -4.04 -0.02 1.82 16 15 C -0.09 -0.78 5.46 -27.88 -0.15 -0.93 16 16 C -0.06 -0.56 5.13 -104.63 -0.54 -1.10 16 17 C -0.11 -0.87 9.70 -39.58 -0.38 -1.26 16 18 C -0.11 -0.78 10.05 -39.59 -0.40 -1.18 16 19 C -0.12 -0.93 9.83 -39.55 -0.39 -1.32 16 20 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 21 Cl -0.07 -0.66 28.96 -51.86 -1.50 -2.16 16 22 C -0.10 -0.96 9.49 -39.55 -0.38 -1.34 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.39 7.00 8.34 -40.82 -0.34 6.66 16 27 H 0.39 4.33 8.49 -40.82 -0.35 3.98 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -33.66 324.62 -9.68 -43.34 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.44 Total: 4.75 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -3.70 Total: 1.50 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.00 Total: -52.99 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.66 -9.68 -43.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217469952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.355 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds