Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47284 * 240.00099 * 3 2 1 5 5 H 1.48505 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46945 * 120.00067 * 3 2 1 7 7 C 1.37878 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.46961 * 179.97438 * 9 7 2 11 11 N 1.30976 * 126.43706 * 90.30343 * 10 9 7 12 12 C 1.35224 * 105.58021 * 180.10516 * 11 10 9 13 13 C 1.48395 * 126.41863 * 179.87614 * 12 11 10 14 14 C 1.40450 * 119.72031 * 359.89319 * 13 12 11 15 15 C 1.35783 * 120.85009 * 180.25246 * 14 13 12 16 16 C 1.40688 * 120.03701 * 359.79883 * 15 14 13 17 17 N 1.33760 * 120.89621 * 179.97438 * 16 15 14 18 18 C 1.31337 * 119.76177 * 180.02562 * 17 16 15 19 19 C 1.39684 * 120.72337 * 0.02562 * 18 17 16 20 20 N 1.31316 * 120.68476 * 0.02562 * 19 18 17 21 21 C 1.33822 * 119.71868 * 359.97438 * 20 19 18 22 22 C 1.38145 * 119.72846 * 179.70870 * 13 12 11 23 23 N 1.30775 * 107.17080 * 359.61262 * 12 11 10 24 24 O 1.21292 * 110.09378 * 0.24109 * 23 12 11 25 25 H 0.96997 * 119.99634 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47086 * 59.99681 * 9 7 2 27 27 H 1.08995 * 109.46998 * 300.00061 * 9 7 2 28 28 H 1.07997 * 119.57470 * 0.06615 * 14 13 12 29 29 H 1.08005 * 119.97769 * 179.81666 * 15 14 13 30 30 H 1.08001 * 119.63841 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.65680 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.24097 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.7317 -4.2395 1.0542 12 6 3.5566 -5.1967 0.5728 13 6 4.3674 -6.1460 1.3750 14 6 4.3165 -6.0927 2.7776 15 6 5.0526 -6.9468 3.5341 16 6 5.8769 -7.9041 2.9149 17 7 6.6097 -8.7536 3.6434 18 6 7.3720 -9.6382 3.0422 19 6 7.4274 -9.7024 1.6479 20 7 6.7185 -8.8790 0.9105 21 6 5.9340 -7.9688 1.4995 22 6 5.1629 -7.0773 0.7362 23 7 3.5018 -5.1329 -0.7322 24 8 2.7459 -4.2484 -1.0749 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.6860 -5.3609 3.2607 29 1 5.0050 -6.8914 4.6116 30 1 7.9631 -10.3228 3.6323 31 1 8.0599 -10.4369 1.1715 32 1 5.1963 -7.1156 -0.3427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236206331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = 130.054913 kcal Electronic energy + Delta-G solvation = -19898.005333 eV Core-core repulsion = 16633.913209 eV Total energy + Delta-G solvation = -3264.092124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.90581 -41.57330 -37.95049 -35.22607 -35.01119 -33.89975 -32.28756 -31.00117 -30.51750 -28.48532 -25.99919 -24.84948 -24.07488 -22.91997 -22.62880 -20.91664 -18.87299 -18.22011 -17.63385 -17.18725 -16.56034 -16.29479 -15.29993 -15.18162 -14.89685 -14.81681 -14.41076 -13.86497 -13.32612 -12.76045 -12.61964 -12.52674 -12.13438 -11.98449 -11.97097 -11.90924 -11.46496 -11.21476 -11.01062 -10.82428 -10.49022 -10.24328 -10.05691 -9.38355 -9.34590 -9.00034 -8.66094 -8.55617 -6.30067 -4.36462 -0.13370 0.22580 1.53659 1.87039 2.39172 3.11634 3.23268 3.27371 3.31112 3.48487 3.65946 3.82497 3.82743 3.97721 4.00945 4.27694 4.43757 4.60638 4.69479 4.89199 5.04572 5.08484 5.14609 5.38111 5.65570 5.68505 5.88749 5.92319 6.18339 6.36203 6.42976 6.51565 6.98530 7.04123 7.09841 7.44570 7.62692 7.84984 8.63558 8.72141 9.28978 10.80200 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.003220 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.008227 B = 8692.487201 C = 8942.164123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.100 3.900 10 C 0.247 3.753 11 N -0.497 5.497 12 C 0.185 3.815 13 C 0.026 3.974 14 C -0.059 4.059 15 C -0.087 4.087 16 C 0.085 3.915 17 N -0.425 5.425 18 C 0.075 3.925 19 C 0.071 3.929 20 N -0.420 5.420 21 C 0.078 3.922 22 C -0.053 4.053 23 N -0.390 5.390 24 O 0.072 5.928 25 H 0.269 0.731 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.926 -16.454 5.130 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.062 3.938 10 C 0.029 3.971 11 N -0.230 5.230 12 C -0.084 4.084 13 C 0.022 3.978 14 C -0.080 4.080 15 C -0.106 4.106 16 C -0.039 4.039 17 N -0.139 5.139 18 C -0.100 4.100 19 C -0.105 4.105 20 N -0.134 5.134 21 C -0.046 4.046 22 C -0.075 4.075 23 N -0.100 5.100 24 O 0.013 5.987 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.171 0.829 29 H 0.165 0.835 30 H 0.192 0.808 31 H 0.192 0.808 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.071 -16.724 5.010 20.672 hybrid contribution 0.457 0.933 -0.079 1.042 sum 11.527 -15.791 4.931 20.163 Atomic orbital electron populations 1.69909 1.06038 1.27839 1.48636 1.24919 0.94997 0.99456 0.94222 0.86405 0.79459 0.81798 0.79004 1.19871 1.20893 1.19903 1.20745 0.93241 0.88782 1.53831 0.92033 1.18273 0.89774 0.84348 1.01452 1.30174 0.94105 0.94362 0.78487 1.72056 1.12910 1.08905 1.29103 1.23678 0.99153 0.97505 0.88087 1.17393 0.95148 0.93075 0.92171 1.21107 0.97196 0.97864 0.91825 1.20692 0.95255 0.93636 1.01015 1.19650 0.97180 0.96329 0.90788 1.68693 1.04008 1.02477 1.38747 1.24073 0.95866 0.96095 0.94014 1.24057 0.96801 0.97162 0.92433 1.68678 1.03609 1.02099 1.38985 1.19312 0.97487 0.96293 0.91504 1.21042 0.93373 0.92132 1.00955 1.74788 1.12064 1.08555 1.14642 1.85267 1.42705 1.34041 1.36675 0.92123 0.92146 0.91078 0.82934 0.83502 0.80811 0.80781 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 13.29 55.43 0.74 -23.36 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.77 9.09 -34.44 -0.31 -14.08 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.10 2.36 5.60 -29.04 -0.16 2.20 16 10 C 0.25 5.35 7.69 -12.99 -0.10 5.25 16 11 N -0.50 -10.40 11.22 -9.88 -0.11 -10.51 16 12 C 0.19 3.55 7.78 -156.11 -1.22 2.34 16 13 C 0.03 0.41 5.87 -104.92 -0.62 -0.20 16 14 C -0.06 -0.81 9.60 -39.63 -0.38 -1.19 16 15 C -0.09 -1.06 9.95 -39.54 -0.39 -1.45 16 16 C 0.08 1.11 6.59 -84.74 -0.56 0.55 16 17 N -0.43 -4.95 10.46 -10.76 -0.11 -5.06 16 18 C 0.08 0.62 11.21 -17.22 -0.19 0.43 16 19 C 0.07 0.61 11.21 -17.23 -0.19 0.42 16 20 N -0.42 -5.27 10.46 -10.82 -0.11 -5.39 16 21 C 0.08 1.08 6.59 -84.81 -0.56 0.52 16 22 C -0.05 -0.79 9.65 -38.79 -0.37 -1.16 16 23 N -0.39 -7.78 11.81 30.97 0.37 -7.41 16 24 O 0.07 1.50 11.29 18.02 0.20 1.71 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.15 2.03 7.84 -52.49 -0.41 1.62 16 29 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 30 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.15 2.22 7.83 -52.49 -0.41 1.81 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -29.82 297.85 -7.20 -37.01 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -2.48 Total: -2.13 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -5.16 Total: -4.69 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.77 Total: -51.73 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.82 -7.20 -37.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236206331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.068 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds