Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47284 * 240.00099 * 3 2 1 5 5 H 1.48505 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46945 * 120.00067 * 3 2 1 7 7 C 1.37878 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.46961 * 179.97438 * 9 7 2 11 11 N 1.30976 * 126.43706 * 90.30343 * 10 9 7 12 12 C 1.35224 * 105.58021 * 180.10516 * 11 10 9 13 13 C 1.48395 * 126.41863 * 179.87614 * 12 11 10 14 14 C 1.40450 * 119.72031 * 359.89319 * 13 12 11 15 15 C 1.35783 * 120.85009 * 180.25246 * 14 13 12 16 16 C 1.40688 * 120.03701 * 359.79883 * 15 14 13 17 17 N 1.33760 * 120.89621 * 179.97438 * 16 15 14 18 18 C 1.31337 * 119.76177 * 180.02562 * 17 16 15 19 19 C 1.39684 * 120.72337 * 0.02562 * 18 17 16 20 20 N 1.31316 * 120.68476 * 0.02562 * 19 18 17 21 21 C 1.33822 * 119.71868 * 359.97438 * 20 19 18 22 22 C 1.38145 * 119.72846 * 179.70870 * 13 12 11 23 23 N 1.30775 * 107.17080 * 359.61262 * 12 11 10 24 24 O 1.21292 * 110.09378 * 0.24109 * 23 12 11 25 25 H 0.96997 * 119.99634 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47086 * 59.99681 * 9 7 2 27 27 H 1.08995 * 109.46998 * 300.00061 * 9 7 2 28 28 H 1.07997 * 119.57470 * 0.06615 * 14 13 12 29 29 H 1.08005 * 119.97769 * 179.81666 * 15 14 13 30 30 H 1.08001 * 119.63841 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.65680 * 180.02562 * 19 18 17 32 32 H 1.08002 * 120.24097 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.7317 -4.2395 1.0542 12 6 3.5566 -5.1967 0.5728 13 6 4.3674 -6.1460 1.3750 14 6 4.3165 -6.0927 2.7776 15 6 5.0526 -6.9468 3.5341 16 6 5.8769 -7.9041 2.9149 17 7 6.6097 -8.7536 3.6434 18 6 7.3720 -9.6382 3.0422 19 6 7.4274 -9.7024 1.6479 20 7 6.7185 -8.8790 0.9105 21 6 5.9340 -7.9688 1.4995 22 6 5.1629 -7.0773 0.7362 23 7 3.5018 -5.1329 -0.7322 24 8 2.7459 -4.2484 -1.0749 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.6860 -5.3609 3.2607 29 1 5.0050 -6.8914 4.6116 30 1 7.9631 -10.3228 3.6323 31 1 8.0599 -10.4369 1.1715 32 1 5.1963 -7.1156 -0.3427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236206331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = 109.866446 kcal Electronic energy + Delta-G solvation = -19898.880770 eV Core-core repulsion = 16633.913209 eV Total energy + Delta-G solvation = -3264.967561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.51597 -42.45716 -38.99242 -36.77996 -35.96087 -35.67124 -33.97274 -31.93353 -31.73736 -30.28986 -27.02551 -26.17146 -25.64403 -24.31184 -23.77398 -22.33818 -19.93443 -19.35447 -19.23937 -18.37511 -18.25087 -17.66389 -16.74473 -16.31531 -16.20218 -15.73974 -15.47151 -14.97080 -14.80387 -14.46176 -14.24518 -13.82541 -13.45185 -13.24995 -12.97418 -12.92471 -12.88037 -12.76477 -12.61613 -12.50750 -12.19327 -12.01375 -11.87646 -10.99153 -10.67111 -10.20469 -10.01187 -9.69962 -8.31216 -6.44572 -1.10844 -0.68372 0.17143 0.69901 1.13170 1.45033 1.45816 1.54405 1.89046 1.89882 2.29445 2.40512 2.86348 2.88453 2.99338 3.04912 3.11111 3.20640 3.71037 3.77059 3.91502 4.11600 4.16687 4.40805 4.49961 4.61837 4.71418 4.79530 4.90690 5.08849 5.09517 5.17076 5.20485 5.46596 5.58376 5.86705 6.17036 6.59568 6.63089 7.08413 7.24329 8.79340 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.003220 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.008227 B = 8692.487201 C = 8942.164123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.109 3.891 10 C 0.239 3.761 11 N -0.504 5.504 12 C 0.196 3.804 13 C -0.002 4.002 14 C -0.069 4.069 15 C -0.073 4.073 16 C 0.074 3.926 17 N -0.446 5.446 18 C 0.097 3.903 19 C 0.089 3.911 20 N -0.452 5.452 21 C 0.057 3.943 22 C -0.051 4.051 23 N -0.400 5.400 24 O 0.063 5.937 25 H 0.273 0.727 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.227 0.773 31 H 0.223 0.777 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.437 -18.292 6.421 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.072 0.928 9 C 0.071 3.929 10 C 0.020 3.980 11 N -0.238 5.238 12 C -0.074 4.074 13 C -0.006 4.006 14 C -0.090 4.090 15 C -0.092 4.092 16 C -0.049 4.049 17 N -0.160 5.160 18 C -0.080 4.080 19 C -0.088 4.088 20 N -0.167 5.167 21 C -0.064 4.064 22 C -0.073 4.073 23 N -0.112 5.112 24 O 0.008 5.992 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.169 0.831 29 H 0.189 0.811 30 H 0.243 0.757 31 H 0.240 0.760 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.542 -18.527 6.279 23.792 hybrid contribution -0.090 1.167 -0.406 1.239 sum 13.451 -17.360 5.873 22.733 Atomic orbital electron populations 1.69992 1.07256 1.28869 1.49131 1.25702 0.95801 1.02578 0.93632 0.85448 0.78359 0.77939 0.79053 1.19363 1.19961 1.19614 1.20988 0.93111 0.90175 1.54176 0.92807 1.17977 0.89846 0.84432 1.00680 1.29774 0.94491 0.94533 0.79167 1.72034 1.13302 1.09397 1.29020 1.24219 0.98218 0.96967 0.87979 1.17446 0.96474 0.93747 0.92891 1.21047 0.98228 0.98803 0.90899 1.20904 0.93912 0.92465 1.01937 1.19781 0.97643 0.96925 0.90568 1.68795 1.05006 1.03352 1.38884 1.25030 0.93754 0.94659 0.94519 1.24990 0.94954 0.95953 0.92878 1.68708 1.04757 1.03067 1.40138 1.19290 0.98276 0.96955 0.91922 1.20984 0.93425 0.92280 1.00599 1.74767 1.12520 1.08717 1.15201 1.85246 1.43103 1.34412 1.36478 0.91764 0.92515 0.92170 0.83123 0.81130 0.75690 0.76039 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.29 13.29 21.45 0.28 -50.01 16 2 C 0.02 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -29.21 9.09 25.60 0.23 -28.98 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.11 5.37 5.60 29.10 0.16 5.53 16 10 C 0.24 10.81 7.69 88.35 0.68 11.49 16 11 N -0.50 -21.90 11.22 -302.48 -3.39 -25.29 16 12 C 0.20 7.80 7.78 137.28 1.07 8.87 16 13 C 0.00 -0.06 5.87 -20.05 -0.12 -0.18 16 14 C -0.07 -1.91 9.60 22.24 0.21 -1.70 16 15 C -0.07 -1.71 9.95 22.30 0.22 -1.49 16 16 C 0.07 1.81 6.59 40.33 0.27 2.08 16 17 N -0.45 -8.91 10.46 -187.96 -1.97 -10.87 16 18 C 0.10 1.12 11.21 85.12 0.95 2.08 16 19 C 0.09 1.14 11.21 85.12 0.95 2.09 16 20 N -0.45 -10.42 10.46 -188.13 -1.97 -12.38 16 21 C 0.06 1.55 6.59 40.26 0.27 1.81 16 22 C -0.05 -1.55 9.65 22.78 0.22 -1.33 16 23 N -0.40 -16.57 11.81 -59.10 -0.70 -17.26 16 24 O 0.06 2.74 11.29 74.55 0.84 3.58 16 25 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 26 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.15 4.13 7.84 -2.91 -0.02 4.11 16 29 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.23 0.20 8.06 -2.91 -0.02 0.18 16 31 H 0.22 0.56 8.06 -2.91 -0.02 0.54 16 32 H 0.14 4.35 7.83 -2.91 -0.02 4.33 16 Total: -1.00 -66.24 297.85 1.88 -64.35 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 1.17 Total: 2.07 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.58 Total: 2.00 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -7.74 Total: -115.82 kcal Atomic # 8 Polarization: 2.74 SS G_CDS: 0.84 Total: 3.58 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -66.24 1.88 -64.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236206331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.221 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds