Wall clock time and date at job start Tue Mar 31 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38304 * 119.97525 * 2 1 4 4 C 1.38252 * 120.15056 * 180.02562 * 3 2 1 5 5 C 1.38166 * 120.08935 * 0.24604 * 4 3 2 6 6 C 1.38796 * 119.94340 * 359.47302 * 5 4 3 7 7 N 1.40009 * 120.07881 * 180.25277 * 6 5 4 8 8 C 1.34777 * 119.99665 * 325.31692 * 7 6 5 9 9 O 1.21586 * 119.99950 * 4.47686 * 8 7 6 10 10 N 1.34773 * 119.99876 * 184.47681 * 8 7 6 11 11 C 1.46502 * 119.99759 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46920 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47299 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99719 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00065 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00334 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99766 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47436 * 59.99660 * 17 15 13 19 19 H 1.48503 * 109.46747 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46973 * 299.99157 * 17 15 13 21 21 C 1.38191 * 119.97263 * 179.97438 * 2 1 3 22 22 Cl 1.73601 * 120.04132 * 0.02587 * 21 2 1 23 23 H 1.09000 * 109.47077 * 90.00154 * 1 2 3 24 24 H 1.09000 * 109.46954 * 210.00367 * 1 2 3 25 25 H 1.09003 * 109.46377 * 330.00468 * 1 2 3 26 26 H 1.07995 * 119.92345 * 359.96980 * 3 2 1 27 27 H 1.07999 * 119.95112 * 179.97438 * 4 3 2 28 28 H 1.07998 * 120.02839 * 179.73056 * 5 4 3 29 29 H 0.96996 * 120.00155 * 145.30762 * 7 6 5 30 30 H 0.96995 * 119.99966 * 0.02562 * 10 8 7 31 31 H 1.09001 * 109.47423 * 300.00029 * 11 10 8 32 32 H 1.08997 * 109.47089 * 60.00960 * 11 10 8 33 33 H 1.08999 * 109.47412 * 300.00778 * 12 11 10 34 34 H 1.09003 * 109.46827 * 60.00130 * 12 11 10 35 35 H 0.96994 * 119.99948 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1980 0.0000 4 6 3.5805 1.2023 -0.0005 5 6 4.2769 0.0089 -0.0062 6 6 3.5873 -1.1956 -0.0003 7 7 4.2901 -2.4065 -0.0007 8 6 5.4555 -2.5090 -0.6699 9 8 5.9374 -1.5293 -1.2050 10 7 6.0866 -3.6974 -0.7460 11 6 7.3531 -3.8089 -1.4739 12 6 7.8536 -5.2532 -1.4081 13 6 9.1567 -5.3679 -2.1563 14 1 9.5852 -4.4975 -2.6310 15 6 9.8018 -6.5838 -2.2349 16 7 9.2803 -7.6436 -1.6565 17 14 11.4175 -6.7257 -3.1618 18 1 12.4235 -5.8251 -2.5439 19 1 11.9026 -8.1279 -3.0991 20 1 11.2102 -6.3373 -4.5801 21 6 2.1974 -1.1971 0.0005 22 17 1.3297 -2.7007 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3632 0.8901 0.5138 26 1 1.6564 2.1324 -0.0005 27 1 4.1168 2.1397 -0.0010 28 1 5.3568 0.0134 -0.0110 29 1 3.9384 -3.1716 0.4808 30 1 5.7019 -4.4790 -0.3194 31 1 7.2000 -3.5249 -2.5151 32 1 8.0916 -3.1471 -1.0216 33 1 8.0065 -5.5377 -0.3670 34 1 7.1149 -5.9147 -1.8607 35 1 9.7344 -8.4989 -1.7115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273207868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:21 Heat of formation + Delta-G solvation = -24.394355 kcal Electronic energy + Delta-G solvation = -18858.254942 eV Core-core repulsion = 15688.572890 eV Total energy + Delta-G solvation = -3169.682053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60549 -38.93706 -36.60418 -35.39729 -34.61421 -32.97765 -32.39976 -30.28442 -28.95348 -27.07459 -24.88675 -22.70911 -22.36569 -20.96238 -20.36606 -18.43705 -17.26611 -16.64530 -16.32219 -15.87646 -15.13868 -14.77928 -14.54983 -14.35043 -14.15785 -13.71822 -13.45184 -13.31151 -12.64090 -12.56782 -12.30137 -12.11721 -11.67780 -11.60998 -11.24072 -11.05555 -10.95685 -10.67543 -10.48567 -10.28555 -9.94861 -9.61081 -9.31438 -8.76552 -8.67423 -8.42898 -8.09715 -6.11233 -4.14364 1.00446 1.15216 1.96356 2.75379 3.24717 3.30358 3.34259 3.37640 3.62927 4.32458 4.47592 4.53698 4.71165 5.01223 5.14522 5.23979 5.25906 5.36524 5.39918 5.57462 5.83175 6.01708 6.10467 6.22632 6.32134 6.33349 6.40603 6.69947 6.83478 6.84387 7.01906 7.51051 7.58608 7.86979 8.12987 8.27529 8.73106 8.91474 9.50587 11.00372 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.035516 B = 0.003073 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.192099 B = 9108.305804 C = 9755.823922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.092 4.092 5 C -0.117 4.117 6 C 0.192 3.808 7 N -0.690 5.690 8 C 0.699 3.301 9 O -0.579 6.579 10 N -0.729 5.729 11 C 0.139 3.861 12 C 0.013 3.987 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.074 4.074 22 Cl -0.067 7.067 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.152 0.848 29 H 0.407 0.593 30 H 0.396 0.604 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.989 14.066 6.396 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.062 4.062 3 C -0.153 4.153 4 C -0.111 4.111 5 C -0.138 4.138 6 C 0.094 3.906 7 N -0.338 5.338 8 C 0.400 3.600 9 O -0.456 6.456 10 N -0.382 5.382 11 C 0.016 3.984 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.104 4.104 22 Cl -0.038 7.038 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.170 0.830 29 H 0.243 0.757 30 H 0.229 0.771 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.480 14.520 5.885 23.473 hybrid contribution 0.474 -1.184 -0.077 1.277 sum -17.006 13.336 5.807 22.378 Atomic orbital electron populations 1.20846 0.90259 1.03313 1.02910 1.19531 0.96471 0.90883 0.99296 1.20931 0.94216 0.96859 1.03342 1.21159 0.93963 0.98067 0.97882 1.21404 1.02038 0.89900 1.00451 1.17244 0.88152 0.86347 0.98849 1.42740 1.23461 1.12933 1.54631 1.16008 0.79865 0.84796 0.79352 1.90887 1.66690 1.36417 1.51620 1.45585 1.26112 1.08601 1.57926 1.21694 0.80846 1.01172 0.94665 1.19330 0.96549 0.88548 0.98024 1.20996 1.05966 0.95173 1.34001 0.92223 1.24993 0.97975 0.95716 0.95560 1.69943 1.39411 1.00095 1.43848 0.86559 0.83474 0.77030 0.80401 1.20079 1.21238 1.20084 1.20614 0.90258 0.87473 1.12025 1.98345 1.76341 1.32023 1.97109 0.90680 0.90904 0.91098 0.85303 0.85145 0.83034 0.75652 0.77052 0.92454 0.92427 0.95891 0.95887 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.61 36.01 0.35 -0.54 16 2 C -0.06 -0.62 5.88 -104.61 -0.62 -1.23 16 3 C -0.13 -1.27 9.70 -39.55 -0.38 -1.65 16 4 C -0.09 -0.98 10.04 -39.60 -0.40 -1.37 16 5 C -0.12 -1.58 8.70 -39.40 -0.34 -1.93 16 6 C 0.19 2.61 6.31 -83.64 -0.53 2.08 16 7 N -0.69 -9.53 5.05 -14.20 -0.07 -9.61 16 8 C 0.70 12.09 8.41 -86.92 -0.73 11.35 16 9 O -0.58 -11.78 13.76 5.29 0.07 -11.71 16 10 N -0.73 -12.64 5.56 -65.22 -0.36 -13.00 16 11 C 0.14 2.90 5.61 -4.04 -0.02 2.88 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.07 -0.88 6.33 -39.32 -0.25 -1.13 16 22 Cl -0.07 -0.73 26.30 -51.86 -1.36 -2.09 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.55 6.90 -51.93 -0.36 0.19 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.15 2.31 6.20 -52.49 -0.33 1.99 16 29 H 0.41 4.65 8.10 -40.82 -0.33 4.32 16 30 H 0.40 5.90 8.49 -40.82 -0.35 5.55 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -31.17 315.70 -9.01 -40.18 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.28 Total: 4.95 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.48 Total: -4.49 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.30 Total: -47.86 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.36 Total: -2.09 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.17 -9.01 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273207868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.788 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds