Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 O 1.45206 * 109.47102 * 240.00168 * 2 1 3 5 5 C 1.34224 * 117.00077 * 90.00098 * 4 2 1 6 6 O 1.20833 * 120.00103 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00302 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.47581 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47581 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99778 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00242 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99823 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00194 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46954 * 89.99713 * 13 11 9 15 15 H 1.48494 * 109.47318 * 209.99981 * 13 11 9 16 16 H 1.48497 * 109.46893 * 330.00063 * 13 11 9 17 17 C 1.50704 * 109.47224 * 120.00260 * 2 1 3 18 18 C 1.38240 * 120.00544 * 94.72102 * 17 2 1 19 19 C 1.38226 * 120.00853 * 179.74768 * 18 17 2 20 20 C 1.38257 * 120.02666 * 0.55132 * 19 18 17 21 21 C 1.38203 * 120.01415 * 359.70878 * 20 19 18 22 22 C 1.38329 * 120.00553 * 275.00454 * 17 2 1 23 23 Cl 1.73597 * 120.01313 * 359.97438 * 22 17 2 24 24 H 1.09000 * 109.47214 * 60.00216 * 1 2 3 25 25 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47123 * 299.99347 * 1 2 3 27 27 H 1.09009 * 109.46972 * 299.99362 * 7 5 4 28 28 H 1.08995 * 109.47473 * 59.99636 * 7 5 4 29 29 H 1.09005 * 109.46903 * 300.00018 * 8 7 5 30 30 H 1.09000 * 109.47608 * 59.99121 * 8 7 5 31 31 H 0.97002 * 119.99857 * 179.97438 * 12 11 9 32 32 H 1.08001 * 119.99156 * 0.02562 * 18 17 2 33 33 H 1.07993 * 119.98279 * 180.25588 * 19 18 17 34 34 H 1.07996 * 119.99592 * 179.72239 * 20 19 18 35 35 H 1.07993 * 120.00274 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2811 6 8 1.9974 1.2518 -2.2506 7 6 2.7182 -0.5771 -3.5495 8 6 2.8636 0.4892 -4.6371 9 6 3.3641 -0.1521 -5.9057 10 1 3.5594 -1.2139 -5.9333 11 6 3.5726 0.6168 -7.0310 12 7 3.3343 1.9097 -6.9974 13 14 4.1937 -0.1780 -8.6033 14 1 3.0380 -0.6215 -9.4237 15 1 4.9974 0.8064 -9.3715 16 1 5.0393 -1.3507 -8.2645 17 6 2.0324 -0.7105 1.2305 18 6 2.3557 -2.0532 1.1699 19 6 2.8214 -2.7036 2.2971 20 6 2.9534 -2.0147 3.4885 21 6 2.6253 -0.6737 3.5516 22 6 2.1644 -0.0206 2.4221 23 17 1.7522 1.6639 2.5006 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 3.6872 -1.0407 -3.3640 28 1 2.0088 -1.3368 -3.8775 29 1 1.8949 0.9532 -4.8227 30 1 3.5732 1.2486 -4.3089 31 1 3.4814 2.4506 -7.7890 32 1 2.2487 -2.5928 0.2405 33 1 3.0778 -3.7515 2.2482 34 1 3.3130 -2.5245 4.3700 35 1 2.7288 -0.1356 4.4822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291248789.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = -86.931205 kcal Electronic energy + Delta-G solvation = -19121.826006 eV Core-core repulsion = 15917.139401 eV Total energy + Delta-G solvation = -3204.686605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39534 -39.33312 -36.66429 -36.37545 -33.60234 -33.10777 -31.08651 -30.99985 -29.43616 -26.15744 -24.27207 -23.13315 -22.26568 -20.91353 -19.70110 -17.54597 -17.44597 -16.38823 -15.93844 -15.82961 -15.39274 -14.93602 -14.46607 -14.18292 -14.04106 -13.72341 -13.43723 -12.91813 -12.54498 -12.29811 -12.17240 -11.87956 -11.78542 -11.69288 -11.30790 -11.16279 -10.96650 -10.72965 -10.62996 -10.50325 -10.05630 -9.91950 -9.56704 -9.18996 -9.14817 -8.93140 -8.37932 -6.01639 -4.06644 0.85402 1.00228 1.89934 2.81569 2.99392 3.31491 3.36932 3.38037 3.40798 4.33534 4.44125 4.58953 4.71694 4.99455 5.01379 5.10550 5.16679 5.33350 5.33804 5.38452 5.61848 5.74029 5.77598 5.94224 6.05906 6.10770 6.12413 6.16143 6.22687 6.52921 6.66177 6.94217 7.66211 7.73118 7.97800 8.24776 8.40408 9.00456 9.57452 11.09350 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.029446 B = 0.003374 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.664965 B = 8296.887932 C = 8833.504852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 H 0.100 0.900 4 O -0.359 6.359 5 C 0.457 3.543 6 O -0.502 6.502 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.529 4.529 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.075 4.075 18 C -0.082 4.082 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.029 4.029 23 Cl -0.064 7.064 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -8.243 22.227 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.118 0.882 4 O -0.277 6.277 5 C 0.300 3.700 6 O -0.387 6.387 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.527 5.527 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.076 4.076 18 C -0.101 4.101 19 C -0.134 4.134 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.056 4.056 23 Cl -0.035 7.035 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.380 -7.541 22.159 23.650 hybrid contribution 0.276 -0.036 -0.766 0.815 sum -3.103 -7.577 21.393 22.906 Atomic orbital electron populations 1.22131 0.93057 1.03143 1.03497 1.21323 0.94726 0.96779 0.80753 0.88236 1.86578 1.77683 1.43086 1.20385 1.24808 0.73811 0.86433 0.84940 1.90636 1.47464 1.16919 1.83726 1.21770 1.01715 1.01991 0.88507 1.19022 0.98591 0.92473 0.90358 1.21147 1.45148 0.94686 0.95698 0.92314 1.25021 0.95489 0.94812 0.99002 1.69994 1.48318 1.05005 1.29426 0.86543 0.78862 0.79078 0.83201 1.20602 1.21190 1.19783 1.19576 1.00521 0.94610 0.92908 1.21116 0.96669 0.92936 0.99341 1.21314 0.98984 1.00517 0.92623 1.21151 0.99561 0.93622 0.98424 1.20999 0.99804 0.95024 0.97228 1.20738 1.03812 0.85912 0.95116 1.98387 1.92004 1.14734 1.98408 0.90999 0.91452 0.90821 0.88967 0.88919 0.95564 0.95572 0.92842 0.83978 0.85123 0.85072 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.53 37.16 0.35 -1.71 16 2 C 0.12 1.75 2.29 -27.88 -0.06 1.68 16 3 H 0.10 1.64 6.14 -51.93 -0.32 1.32 16 4 O -0.36 -5.91 8.72 -39.24 -0.34 -6.25 16 5 C 0.46 9.02 7.93 36.00 0.29 9.30 16 6 O -0.50 -11.47 15.20 -18.76 -0.29 -11.75 16 7 C -0.10 -2.08 5.75 -27.89 -0.16 -2.24 16 8 C 0.03 0.86 4.26 -27.89 -0.12 0.74 16 9 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 13 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.08 -0.94 5.07 -104.59 -0.53 -1.47 16 18 C -0.08 -0.90 9.35 -39.59 -0.37 -1.28 16 19 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 20 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 21 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 22 C -0.03 -0.33 6.31 -39.50 -0.25 -0.58 16 23 Cl -0.06 -0.75 27.16 -51.86 -1.41 -2.16 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 27 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 28 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 29 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.14 1.52 7.35 -52.49 -0.39 1.13 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -31.95 320.60 -8.39 -40.35 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.46 Total: -1.99 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.45 Total: -13.13 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.63 Total: -18.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.95 -8.39 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291248789.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.586 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds