Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48504 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 300.00071 * 3 2 1 6 6 H 1.48500 * 109.47389 * 60.00052 * 3 2 1 7 7 C 1.37878 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46724 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00427 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99877 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00447 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47294 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 C 1.38716 * 120.39965 * 89.99975 * 16 15 14 18 18 C 1.38561 * 118.43084 * 179.97438 * 17 16 15 19 19 C 1.38396 * 119.15549 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 119.63406 * 180.02562 * 19 18 17 21 21 N 1.31943 * 120.72782 * 0.02562 * 19 18 17 22 22 C 1.31910 * 121.70940 * 359.73051 * 21 19 18 23 23 H 0.97004 * 119.99507 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46949 * 59.99908 * 9 7 2 25 25 H 1.09000 * 109.47318 * 300.00868 * 9 7 2 26 26 H 1.09001 * 109.46832 * 60.00314 * 10 9 7 27 27 H 1.08996 * 109.46952 * 300.00294 * 10 9 7 28 28 H 0.97006 * 119.99798 * 0.02562 * 13 11 10 29 29 H 1.09001 * 109.47059 * 60.00204 * 14 13 11 30 30 H 1.09004 * 109.47074 * 300.00161 * 14 13 11 31 31 H 1.09001 * 109.46832 * 60.00150 * 15 14 13 32 32 H 1.09000 * 109.47611 * 300.00447 * 15 14 13 33 33 H 1.07998 * 120.78070 * 359.95615 * 17 16 15 34 34 H 1.08006 * 120.41879 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.60959 * 180.29040 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2789 -4.9671 -0.0021 13 7 2.1655 -6.1344 -0.0008 14 6 1.4331 -7.4031 -0.0019 15 6 2.4273 -8.5660 -0.0018 16 6 1.6738 -9.8712 -0.0024 17 6 1.3233 -10.4788 -1.1991 18 6 0.6313 -11.6784 -1.1521 19 6 0.3156 -12.2268 0.0788 20 17 -0.5504 -13.7295 0.1522 21 7 0.6656 -11.6201 1.1969 22 6 1.3288 -10.4798 1.1888 23 1 -0.4849 0.8401 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 3.1356 -6.1344 0.0003 29 1 0.8074 -7.4606 -0.8927 30 1 0.8054 -7.4611 0.8873 31 1 3.0533 -8.5087 0.8887 32 1 3.0547 -8.5078 -0.8912 33 1 1.5833 -10.0274 -2.1451 34 1 0.3421 -12.1790 -2.0643 35 1 1.6023 -10.0149 2.1245 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291853317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -30.963422 kcal Electronic energy + Delta-G solvation = -18175.915769 eV Core-core repulsion = 15005.948861 eV Total energy + Delta-G solvation = -3169.966909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76181 -39.16756 -37.10115 -35.69112 -33.46753 -33.37219 -32.37398 -31.01078 -28.87128 -25.86119 -24.25330 -24.09078 -21.99420 -21.43971 -19.66233 -17.84841 -17.25346 -16.91117 -16.08942 -15.72076 -15.38423 -15.24734 -14.79419 -14.43871 -14.23065 -14.06890 -13.68055 -13.20099 -12.55226 -12.51048 -12.26858 -12.12054 -11.83783 -11.72012 -11.48375 -11.17181 -10.95456 -10.59357 -10.35906 -10.03449 -9.97964 -9.68737 -9.31201 -9.17594 -9.01415 -8.86047 -8.33558 -5.97409 -4.01884 0.43999 0.71784 1.42497 3.13560 3.21988 3.31589 3.38334 3.41353 3.47637 4.02742 4.31156 4.35564 4.44728 4.46864 4.59947 4.75086 4.90227 5.17256 5.24695 5.37599 5.41926 5.51265 5.54352 5.82881 5.89013 6.03844 6.20445 6.21781 6.64007 6.87279 7.27347 7.73257 7.82721 7.84623 8.05833 8.37123 8.74174 9.06999 9.61798 11.13550 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.057586 B = 0.002185 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.109574 B =12812.676669 C =12988.993969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.533 6.533 13 N -0.746 5.746 14 C 0.124 3.876 15 C -0.088 4.088 16 C -0.126 4.126 17 C -0.057 4.057 18 C -0.151 4.151 19 C 0.169 3.831 20 Cl -0.034 7.034 21 N -0.476 5.476 22 C 0.126 3.874 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.398 0.602 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -25.896 -1.951 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.408 6.408 13 N -0.401 5.401 14 C -0.001 4.001 15 C -0.126 4.126 16 C -0.128 4.128 17 C -0.083 4.083 18 C -0.172 4.172 19 C 0.005 3.995 20 Cl -0.006 7.006 21 N -0.187 5.187 22 C -0.032 4.032 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.232 0.768 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.990 -26.293 -1.144 26.787 hybrid contribution 0.974 1.047 -0.760 1.620 sum 5.964 -25.246 -1.904 26.011 Atomic orbital electron populations 1.70013 1.06060 1.26486 1.50250 1.25041 0.94839 0.99280 0.95325 0.86529 0.79980 0.83814 0.77589 1.19752 1.21027 1.21014 1.21260 0.92965 0.90994 1.51287 0.92528 1.18911 0.93205 0.89426 0.98637 1.21865 1.00713 0.91872 1.02514 1.21593 0.88666 0.85633 0.74352 1.90682 1.14527 1.87624 1.48006 1.46196 1.10052 1.05466 1.78387 1.21189 0.94115 0.82101 1.02645 1.20756 0.97440 0.89928 1.04496 1.20842 1.00093 0.97753 0.94140 1.21577 0.94351 0.93376 0.98946 1.21861 1.00534 0.97074 0.97743 1.21681 0.96845 0.90680 0.90268 1.98413 1.74198 1.29266 1.98679 1.67034 1.11481 1.09862 1.30288 1.22668 0.92693 0.89534 0.98266 0.92991 0.95831 0.95825 0.90182 0.90213 0.76841 0.91683 0.91566 0.89468 0.89604 0.83476 0.83573 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.13 -2.54 5.64 -27.89 -0.16 -2.70 16 11 C 0.51 9.40 7.83 -10.99 -0.09 9.32 16 12 O -0.53 -12.42 15.98 5.55 0.09 -12.33 16 13 N -0.75 -9.33 5.56 -60.30 -0.33 -9.66 16 14 C 0.12 1.33 5.66 -4.05 -0.02 1.30 16 15 C -0.09 -0.57 5.48 -27.88 -0.15 -0.73 16 16 C -0.13 -0.94 5.15 -104.48 -0.54 -1.48 16 17 C -0.06 -0.39 9.86 -39.29 -0.39 -0.78 16 18 C -0.15 -1.14 9.88 -39.40 -0.39 -1.53 16 19 C 0.17 1.63 7.27 -17.45 -0.13 1.50 16 20 Cl -0.03 -0.30 29.11 -51.86 -1.51 -1.81 16 21 N -0.48 -5.09 10.34 -10.36 -0.11 -5.19 16 22 C 0.13 1.08 10.86 -17.55 -0.19 0.89 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.40 3.60 8.47 -40.82 -0.35 3.25 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -35.43 325.24 -8.36 -43.78 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.53 Total: -2.62 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.58 Total: -6.95 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.29 Total: -41.48 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.43 -8.36 -43.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291853317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.820 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds