Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00080 * 2 1 4 4 N 1.46499 * 109.46992 * 234.99580 * 3 2 1 5 5 C 1.46502 * 120.00345 * 274.99969 * 4 3 2 6 6 C 1.50697 * 109.47079 * 85.00200 * 5 4 3 7 7 H 1.08000 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99754 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99674 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00100 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46920 * 90.00615 * 10 8 6 12 12 H 1.48502 * 109.46849 * 210.00337 * 10 8 6 13 13 H 1.48493 * 109.47130 * 330.00506 * 10 8 6 14 14 S 1.65605 * 119.99782 * 94.99996 * 4 3 2 15 15 O 1.42099 * 106.40321 * 203.53813 * 14 4 3 16 16 O 1.42097 * 106.40157 * 336.45932 * 14 4 3 17 17 C 1.76206 * 107.21866 * 89.99987 * 14 4 3 18 18 C 1.38674 * 120.41384 * 269.72074 * 17 14 4 19 19 C 1.38629 * 118.41556 * 179.78353 * 18 17 14 20 20 C 1.38230 * 119.15958 * 0.50978 * 19 18 17 21 21 N 1.31855 * 120.76550 * 359.72906 * 20 19 18 22 22 C 1.31886 * 121.72534 * 0.02562 * 21 20 19 23 23 H 1.07999 * 119.99751 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.99789 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.00347 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47060 * 354.99792 * 3 2 1 27 27 H 1.09001 * 109.47380 * 114.99880 * 3 2 1 28 28 H 1.08998 * 109.47222 * 205.00373 * 5 4 3 29 29 H 1.09000 * 109.46517 * 324.99960 * 5 4 3 30 30 H 0.97002 * 120.00059 * 179.97438 * 9 8 6 31 31 H 1.07999 * 120.79435 * 0.02562 * 18 17 14 32 32 H 1.07998 * 120.41971 * 180.22651 * 19 18 17 33 33 H 1.08007 * 119.61532 * 179.74798 * 20 19 18 34 34 H 1.07992 * 119.61873 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 -1.1314 5 6 4.3218 0.7267 -1.0023 6 6 4.2324 -0.7485 -1.2971 7 1 3.2814 -1.1911 -1.5544 8 6 5.3644 -1.5332 -1.2373 9 7 5.2863 -2.8207 -1.4940 10 14 7.0091 -0.7678 -0.7915 11 1 7.1966 -0.8201 0.6807 12 1 8.1022 -1.5212 -1.4568 13 1 7.0358 0.6463 -1.2440 14 16 2.5443 2.0461 -2.5562 15 8 3.3481 1.4591 -3.5704 16 8 1.1237 2.0287 -2.5831 17 6 3.0196 3.7403 -2.4631 18 6 2.1425 4.6888 -1.9590 19 6 2.5610 6.0091 -1.9004 20 6 3.8256 6.3355 -2.3532 21 7 4.6313 5.4076 -2.8310 22 6 4.2686 4.1413 -2.8973 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 -0.0896 27 1 2.6213 1.4026 0.9314 28 1 5.0058 1.1975 -1.7084 29 1 4.6903 0.8727 0.0130 30 1 6.0828 -3.3728 -1.4523 31 1 1.1583 4.4050 -1.6165 32 1 1.9055 6.7737 -1.5102 33 1 4.1576 7.3626 -2.3147 34 1 4.9557 3.4095 -3.2954 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292714485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -3.948699 kcal Electronic energy + Delta-G solvation = -20357.671076 eV Core-core repulsion = 17190.919320 eV Total energy + Delta-G solvation = -3166.751756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17215 -36.87458 -36.51447 -35.34390 -33.05742 -32.77068 -31.99550 -31.55779 -28.07186 -25.08381 -24.06157 -23.81092 -22.01891 -19.50373 -18.88563 -17.71056 -17.21002 -16.88809 -16.62777 -16.36337 -15.39628 -14.62721 -14.43783 -14.31765 -14.08137 -13.69375 -13.37666 -13.14073 -12.69176 -12.50099 -12.40175 -11.96442 -11.60294 -11.51923 -11.29737 -11.05664 -10.93322 -10.67891 -10.52450 -10.31569 -10.20561 -9.69842 -9.60106 -9.46093 -8.92407 -8.61724 -8.26375 -6.10356 -4.09987 0.44018 0.82988 1.01342 2.74881 3.24450 3.31638 3.32966 3.36269 3.66464 4.16929 4.26713 4.36285 4.41003 4.60736 4.74356 5.03641 5.14934 5.18627 5.27418 5.46673 5.48553 5.71836 5.75363 5.78867 6.01435 6.07131 6.37204 6.47292 6.63574 6.93325 7.18199 7.22254 7.36033 7.53260 7.63562 8.45594 8.94787 9.48288 11.02633 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.016184 B = 0.007580 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.684724 B = 3693.098174 C = 4760.921300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.161 3.839 4 N -0.973 5.973 5 C 0.223 3.777 6 C -0.530 4.530 7 H 0.083 0.917 8 C 0.075 3.925 9 N -0.893 5.893 10 Si 0.869 3.131 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.264 1.264 14 S 2.689 3.311 15 O -0.934 6.934 16 O -0.961 6.961 17 C -0.732 4.732 18 C 0.021 3.979 19 C -0.198 4.198 20 C 0.142 3.858 21 N -0.498 5.498 22 C 0.200 3.800 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.130 0.870 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 16.297 3.143 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.175 4.175 3 C 0.035 3.965 4 N -0.812 5.812 5 C 0.100 3.900 6 C -0.569 4.569 7 H 0.101 0.899 8 C -0.128 4.128 9 N -0.531 5.531 10 Si 0.696 3.304 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.188 1.188 14 S 2.775 3.225 15 O -0.924 6.924 16 O -0.951 6.951 17 C -0.817 4.817 18 C -0.006 4.006 19 C -0.219 4.219 20 C -0.015 4.015 21 N -0.207 5.207 22 C 0.042 3.958 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.277 16.039 2.143 17.021 hybrid contribution 0.414 0.628 0.837 1.126 sum -4.863 16.667 2.981 17.616 Atomic orbital electron populations 1.23730 0.95905 1.01236 1.02524 1.23590 0.95847 1.00279 0.97774 1.20237 0.90864 0.95349 0.90035 1.57297 1.25395 1.69058 1.29418 1.19567 0.77781 0.95104 0.97500 1.21366 0.97201 0.90554 1.47813 0.89877 1.24851 0.98614 0.94701 0.94642 1.69884 1.29551 1.04895 1.48768 0.86969 0.84445 0.80149 0.78879 1.20097 1.20835 1.18842 1.02342 0.73661 0.72785 0.73727 1.93622 1.70063 1.73983 1.54697 1.93533 1.28479 1.86701 1.86435 1.32622 1.05365 1.28650 1.15048 1.21372 0.97995 0.92387 0.88817 1.22238 0.98558 0.97396 1.03658 1.23132 0.89823 0.99132 0.89383 1.67867 1.35581 1.01816 1.15433 1.22720 0.91830 0.93214 0.88042 0.88810 0.89081 0.85250 0.91215 0.89827 0.94684 0.95002 0.92486 0.83229 0.83921 0.82139 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 14.32 29.02 0.42 -2.60 16 2 C -0.16 -2.72 9.32 -36.02 -0.34 -3.06 16 3 C 0.16 2.58 5.81 -5.19 -0.03 2.55 16 4 N -0.97 -18.55 2.79 -116.95 -0.33 -18.87 16 5 C 0.22 4.96 4.19 -5.19 -0.02 4.93 16 6 C -0.53 -14.30 9.21 -34.44 -0.32 -14.62 16 7 H 0.08 2.44 7.06 -52.49 -0.37 2.07 16 8 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 9 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 10 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 14 S 2.69 50.25 5.61 -107.50 -0.60 49.65 16 15 O -0.93 -20.90 16.28 -57.17 -0.93 -21.83 16 16 O -0.96 -18.43 16.33 -57.17 -0.93 -19.37 16 17 C -0.73 -11.17 5.99 -39.44 -0.24 -11.41 16 18 C 0.02 0.26 9.65 -39.28 -0.38 -0.12 16 19 C -0.20 -1.98 10.11 -39.44 -0.40 -2.38 16 20 C 0.14 1.55 11.18 -17.54 -0.20 1.35 16 21 N -0.50 -7.13 10.36 -13.25 -0.14 -7.26 16 22 C 0.20 3.10 10.69 -17.55 -0.19 2.92 16 23 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 24 H 0.09 1.25 7.84 -52.49 -0.41 0.84 16 25 H 0.13 2.61 6.84 -52.48 -0.36 2.25 16 26 H 0.07 0.92 7.26 -51.93 -0.38 0.55 16 27 H 0.08 1.19 8.00 -51.93 -0.42 0.78 16 28 H 0.04 0.78 6.67 -51.93 -0.35 0.43 16 29 H 0.03 0.66 7.43 -51.93 -0.39 0.27 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.15 1.55 7.70 -52.49 -0.40 1.14 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.17 2.66 7.63 -52.49 -0.40 2.26 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -33.57 308.40 -7.87 -41.44 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.91 Total: 2.09 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -1.78 Total: -20.43 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.31 Total: -52.01 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.86 Total: -41.20 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Atomic # 16 Polarization: 50.25 SS G_CDS: -0.60 Total: 49.65 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.57 -7.87 -41.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292714485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.495 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds