Wall clock time and date at job start Tue Mar 31 2020 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 S 1.81408 * 109.46853 * 270.21387 * 7 6 5 9 9 C 1.81401 * 103.00023 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47010 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.47010 * 179.97438 * 10 9 8 12 12 S 1.80998 * 109.47037 * 179.97438 * 11 10 9 13 13 C 1.76204 * 99.99808 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99944 * 359.97438 * 13 12 11 15 15 C 1.38795 * 119.99851 * 180.02562 * 13 12 11 16 16 N 1.31629 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99823 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46968 * 60.00154 * 17 15 13 19 19 H 1.48507 * 109.46961 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47548 * 299.99849 * 17 15 13 21 21 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 23 23 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 24 24 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 25 25 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 27 27 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 28 28 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 29 29 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 30 30 H 1.09002 * 109.46645 * 299.99894 * 9 8 7 31 31 H 1.09004 * 109.47220 * 59.99422 * 9 8 7 32 32 H 1.08996 * 109.47228 * 299.99874 * 10 9 8 33 33 H 1.09000 * 109.47473 * 60.00330 * 10 9 8 34 34 H 1.08996 * 109.47178 * 300.00095 * 11 10 9 35 35 H 1.09000 * 109.46577 * 59.99973 * 11 10 9 36 36 H 0.97006 * 119.99928 * 179.97438 * 16 15 13 37 37 H 1.08001 * 119.99700 * 359.96970 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 16 4.6364 -3.0257 -1.7109 9 6 5.5383 -4.5863 -1.5065 10 6 5.8735 -5.1655 -2.8824 11 6 6.6347 -6.4815 -2.7100 12 16 7.0307 -7.1671 -4.3376 13 6 7.8784 -8.6341 -3.8537 14 1 8.0101 -8.8610 -2.8060 15 6 8.3778 -9.4974 -4.8189 16 7 8.2177 -9.2206 -6.0958 17 14 9.2772 -11.0522 -4.3059 18 1 8.3696 -11.9049 -3.4969 19 1 9.7086 -11.7968 -5.5162 20 1 10.4688 -10.6908 -3.4968 21 6 2.1981 -1.1970 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.6583 2.1326 0.0004 26 1 4.1204 2.1326 0.0010 27 1 5.3517 -0.0001 -0.0091 28 1 5.2866 -2.3718 0.5133 29 1 3.7450 -3.2618 0.5132 30 1 6.4605 -4.4034 -0.9551 31 1 4.9194 -5.2941 -0.9548 32 1 4.9515 -5.3483 -3.4341 33 1 6.4926 -4.4577 -3.4336 34 1 7.5568 -6.2984 -2.1584 35 1 6.0160 -7.1895 -2.1586 36 1 8.5671 -9.8238 -6.7704 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295227063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:14 Heat of formation + Delta-G solvation = -9.525161 kcal Electronic energy + Delta-G solvation = -15842.186927 eV Core-core repulsion = 13221.486572 eV Total energy + Delta-G solvation = -2620.700355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65603 -34.29444 -33.83065 -32.43458 -32.23575 -27.87437 -27.15285 -26.72764 -25.46137 -22.43024 -21.57137 -20.75604 -17.48072 -16.84183 -16.16940 -15.84973 -15.20861 -15.18021 -14.81658 -14.63038 -14.07010 -13.74267 -13.64036 -13.40271 -13.21226 -13.02240 -12.56920 -12.31407 -12.26057 -11.82626 -11.52043 -11.31097 -11.25345 -11.06078 -10.85119 -10.66779 -10.53345 -10.01800 -9.57568 -9.05893 -9.01625 -8.79873 -8.32540 -7.66889 -6.54243 -6.23117 -3.94030 0.81356 1.14086 1.85828 2.58953 3.21463 3.22928 3.27659 3.55159 3.58254 4.21445 4.35027 4.47014 4.62055 4.86197 4.90182 5.02663 5.06776 5.12943 5.17581 5.22773 5.27571 5.31732 5.39964 5.43442 5.52762 5.60815 5.78093 5.78445 5.86529 5.94922 6.20088 6.26143 6.29574 6.33827 6.48853 6.68252 6.74081 7.59469 8.35621 9.22753 10.84964 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.051794 B = 0.002248 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.475318 B =12451.559536 C =12528.558005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.107 4.107 6 C -0.065 4.065 7 C -0.051 4.051 8 S -0.252 6.252 9 C -0.080 4.080 10 C -0.082 4.082 11 C -0.109 4.109 12 S -0.129 6.129 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.102 4.102 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.268 0.732 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 19.022 14.596 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.198 4.198 8 S -0.022 6.022 9 C -0.229 4.229 10 C -0.122 4.122 11 C -0.260 4.260 12 S 0.099 5.901 13 C -0.666 4.666 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.122 4.122 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.517 19.817 12.413 26.523 hybrid contribution 1.302 -2.117 2.632 3.620 sum -11.214 17.701 15.045 25.796 Atomic orbital electron populations 1.20794 0.91074 1.02715 1.02522 1.19902 0.96158 0.93018 0.99712 1.21056 0.94312 0.97495 1.00942 1.21112 0.94287 0.97922 1.00139 1.21042 1.00074 0.91765 0.99822 1.19225 0.93522 0.93247 1.00670 1.22277 1.02905 0.97527 0.97100 1.87221 1.75136 1.29392 1.10413 1.23535 1.01562 0.95206 1.02647 1.21031 1.01328 0.96226 0.93602 1.23265 1.01217 0.97722 1.03767 1.84684 1.73664 1.27364 1.04340 1.22642 1.41521 1.07242 0.95195 0.90987 1.25021 0.95855 0.98377 0.94559 1.70014 1.43714 1.37116 0.99611 0.86212 0.79716 0.81480 0.78042 1.19934 1.20796 1.19942 1.20929 0.93230 0.97900 1.00113 0.91006 0.91489 0.91594 0.86122 0.85885 0.85820 0.89286 0.89321 0.90188 0.90188 0.90626 0.90627 0.91993 0.91998 0.92215 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.09 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 4 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 5 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 6 C -0.07 -0.67 5.14 -104.63 -0.54 -1.21 16 7 C -0.05 -0.51 6.07 36.00 0.22 -0.30 16 8 S -0.25 -3.32 21.72 -107.50 -2.33 -5.65 16 9 C -0.08 -1.07 5.94 37.15 0.22 -0.85 16 10 C -0.08 -1.38 5.22 -26.73 -0.14 -1.52 16 11 C -0.11 -2.20 5.67 37.16 0.21 -1.99 16 12 S -0.13 -3.40 21.44 -107.50 -2.30 -5.70 16 13 C -0.52 -14.89 9.50 30.94 0.29 -14.60 16 14 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 15 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 16 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 17 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.10 -1.00 9.36 -39.58 -0.37 -1.37 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 24 H 0.07 0.34 8.09 -51.92 -0.42 -0.08 16 25 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 26 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 27 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 28 H 0.09 0.81 8.09 -51.92 -0.42 0.39 16 29 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 31 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -31.49 342.67 -11.26 -42.75 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.87 Total: -1.87 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -1.62 Total: -25.87 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.73 Total: -25.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -4.64 Total: -11.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.49 -11.26 -42.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295227063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.225 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds