Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 120.00118 * 2 1 4 4 H 1.48501 * 109.46765 * 240.00009 * 3 2 1 5 5 H 1.48492 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46993 * 119.99878 * 3 2 1 7 7 C 1.39951 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99539 * 197.84418 * 7 2 1 9 9 C 1.41390 * 119.99988 * 17.85109 * 7 2 1 10 10 C 1.40718 * 120.24089 * 204.38196 * 9 7 2 11 11 C 1.37620 * 119.74496 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24924 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.75093 * 180.02562 * 12 11 10 14 14 O 1.45200 * 109.47019 * 90.00527 * 13 12 11 15 15 C 1.34236 * 116.99754 * 180.02562 * 14 13 12 16 16 O 1.20821 * 119.99927 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99891 * 179.97438 * 15 14 13 18 18 H 1.09012 * 115.56021 * 325.68917 * 17 15 14 19 19 C 1.53072 * 117.49424 * 111.39668 * 17 15 14 20 20 C 1.52999 * 117.49980 * 180.02562 * 17 15 14 21 21 F 1.39900 * 117.49991 * 145.02005 * 20 17 15 22 22 F 1.39894 * 117.49601 * 0.02562 * 20 17 15 23 23 C 1.38640 * 120.49855 * 0.30126 * 12 11 10 24 24 C 1.37623 * 120.24582 * 359.44230 * 23 12 11 25 25 H 0.96998 * 119.99916 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.13053 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.87663 * 180.02562 * 11 10 9 28 28 H 1.09000 * 109.47400 * 330.00029 * 13 12 11 29 29 H 1.09004 * 109.47053 * 210.00122 * 13 12 11 30 30 H 1.09000 * 117.49220 * 0.02562 * 19 17 15 31 31 H 1.09000 * 117.52912 * 214.95272 * 19 17 15 32 32 H 1.07996 * 119.87726 * 179.70127 * 23 12 11 33 33 H 1.07999 * 120.11998 * 180.27710 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3520 -2.4072 -0.3743 10 6 1.8258 -3.6499 0.0855 11 6 1.1798 -4.8068 -0.2861 12 6 0.0660 -4.7511 -1.1097 13 6 -0.6331 -6.0249 -1.5091 14 8 -1.6663 -6.3352 -0.5373 15 6 -2.3872 -7.4477 -0.7485 16 8 -2.1626 -8.1390 -1.7136 17 6 -3.4767 -7.8344 0.2182 18 1 -3.2859 -7.5913 1.2636 19 6 -4.9230 -7.7474 -0.2754 20 6 -4.2622 -9.1136 -0.0774 21 9 -4.6808 -9.8815 1.0146 22 9 -3.9136 -9.8351 -1.2241 23 6 -0.4061 -3.5328 -1.5732 24 6 0.2210 -2.3628 -1.2102 25 1 -0.4850 0.8400 -0.0004 26 1 2.6930 -3.6955 0.7276 27 1 1.5413 -5.7617 0.0660 28 1 0.0894 -6.8403 -1.5442 29 1 -1.0857 -5.8980 -2.4926 30 1 -5.0859 -7.4110 -1.2993 31 1 -5.6841 -7.4475 0.4450 32 1 -1.2717 -3.5015 -2.2183 33 1 -0.1512 -1.4145 -1.5688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296795248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -137.278396 kcal Electronic energy + Delta-G solvation = -20701.913409 eV Core-core repulsion = 16943.246906 eV Total energy + Delta-G solvation = -3758.666503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.90892 -47.55212 -40.32464 -37.81844 -36.65284 -35.62159 -33.91605 -30.87591 -29.41710 -27.53572 -25.40847 -23.58237 -22.84523 -21.13834 -20.62663 -20.10517 -18.57508 -17.43582 -17.18676 -17.00950 -16.27246 -16.11256 -15.59594 -15.35418 -14.37935 -14.20317 -14.08443 -13.89780 -13.76713 -13.57798 -13.21036 -12.68250 -12.50074 -12.29714 -12.06880 -11.78290 -11.53289 -11.20610 -11.04944 -10.90541 -10.56740 -10.51829 -10.32034 -10.22303 -9.75352 -9.51173 -9.26116 -7.61173 -7.50175 -6.90893 -4.50910 1.91806 2.23565 2.64581 2.78692 2.96554 2.99196 3.00093 3.03833 3.25878 3.82289 3.86852 4.18473 4.29264 4.49206 4.88962 5.07898 5.29036 5.36640 5.55865 5.59849 5.63211 6.00342 6.20223 6.26609 6.69438 6.83092 6.93266 7.13639 7.21980 7.47075 7.68814 7.88733 7.91254 7.96140 8.14827 8.49378 8.74094 8.82259 10.02717 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038821 B = 0.002999 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.087329 B = 9334.799086 C = 9595.747176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.062 4.062 12 C -0.239 4.239 13 C 0.136 3.864 14 O -0.340 6.340 15 C 0.483 3.517 16 O -0.500 6.500 17 C -0.170 4.170 18 H 0.160 0.840 19 C -0.143 4.143 20 C 0.228 3.772 21 F -0.154 7.154 22 F -0.139 7.139 23 C -0.074 4.074 24 C -0.171 4.171 25 H 0.284 0.716 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -9.024 0.514 12.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.241 4.241 13 C 0.065 3.935 14 O -0.257 6.257 15 C 0.325 3.675 16 O -0.389 6.389 17 C -0.190 4.190 18 H 0.178 0.822 19 C -0.180 4.180 20 C 0.191 3.809 21 F -0.134 7.134 22 F -0.119 7.119 23 C -0.093 4.093 24 C -0.190 4.190 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.107 0.893 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.338 -9.080 0.215 12.330 hybrid contribution 0.406 0.532 0.102 0.677 sum -7.932 -8.548 0.317 11.666 Atomic orbital electron populations 1.69816 1.07692 1.29698 1.33614 1.25981 0.94774 1.01570 0.92082 0.86313 0.80164 0.79868 0.80135 1.18677 1.20199 1.18858 1.19669 0.98254 0.91253 1.39253 0.90145 1.17682 0.90773 0.92067 0.87817 1.20968 1.04170 0.92662 1.07193 1.20401 0.95064 0.96689 0.95938 1.18656 1.01332 0.91880 1.12204 1.21821 0.86295 0.96152 0.89248 1.86720 1.45853 1.39899 1.53195 1.21996 0.81451 0.79945 0.84124 1.90718 1.66922 1.52014 1.29237 1.23199 0.93140 0.99543 1.03081 0.82208 1.24367 0.93668 0.93604 1.06405 1.19588 1.03117 0.81566 0.76661 1.93060 1.90119 1.77611 1.52640 1.93130 1.92152 1.79560 1.47080 1.20538 0.97655 0.92440 0.98672 1.21292 0.99713 0.96653 1.01355 0.90522 0.88673 0.89259 0.91848 0.91796 0.85140 0.84335 0.89295 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.41 10.95 55.55 0.61 -18.81 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.81 29.60 -169.99 -5.03 12.78 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.62 9.05 -37.74 -0.34 -11.96 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.12 3.08 5.57 -106.83 -0.60 2.48 16 10 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 11 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16 12 C -0.24 -5.17 5.54 -104.33 -0.58 -5.75 16 13 C 0.14 2.53 5.58 36.00 0.20 2.73 16 14 O -0.34 -6.06 10.20 -39.27 -0.40 -6.46 16 15 C 0.48 7.53 7.74 36.00 0.28 7.80 16 16 O -0.50 -8.95 14.90 -18.75 -0.28 -9.23 16 17 C -0.17 -1.90 6.29 -91.74 -0.58 -2.48 16 18 H 0.16 1.44 8.14 -51.92 -0.42 1.02 16 19 C -0.14 -1.19 10.21 -26.67 -0.27 -1.47 16 20 C 0.23 2.55 5.19 -26.71 -0.14 2.41 16 21 F -0.15 -1.69 17.60 2.25 0.04 -1.65 16 22 F -0.14 -1.95 15.72 2.25 0.04 -1.92 16 23 C -0.07 -1.69 9.67 -39.66 -0.38 -2.08 16 24 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 25 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 26 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 29 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 30 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -28.41 305.54 -7.27 -35.68 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.25 Total: 3.84 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.60 Total: -18.84 kcal Atomic # 7 Polarization: -19.41 SS G_CDS: 0.61 Total: -18.81 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.68 Total: -15.69 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.57 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.41 -7.27 -35.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296795248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.597 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds