Wall clock time and date at job start Tue Mar 31 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48497 * 109.47210 * 84.67936 * 3 2 1 5 5 H 1.48500 * 109.47157 * 324.67932 * 3 2 1 6 6 H 1.48504 * 109.46993 * 204.67768 * 3 2 1 7 7 C 1.39948 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99970 * 20.09886 * 7 2 1 9 9 C 1.41402 * 119.99923 * 200.09959 * 7 2 1 10 10 C 1.40711 * 120.24057 * 25.34816 * 9 7 2 11 11 C 1.37626 * 119.73773 * 179.71867 * 10 9 7 12 12 C 1.38627 * 120.24855 * 0.58320 * 11 10 9 13 13 C 1.50703 * 119.74982 * 179.69741 * 12 11 10 14 14 O 1.45201 * 109.46852 * 269.97661 * 13 12 11 15 15 C 1.34234 * 117.00182 * 179.97438 * 14 13 12 16 16 O 1.20826 * 119.99279 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00013 * 179.97438 * 15 14 13 18 18 H 1.08996 * 115.55156 * 34.33188 * 17 15 14 19 19 C 1.52998 * 117.49944 * 248.61751 * 17 15 14 20 20 C 1.53000 * 60.00467 * 252.51643 * 19 17 15 21 21 F 1.39899 * 117.49586 * 252.51775 * 20 19 17 22 22 F 1.39891 * 117.51857 * 107.48223 * 20 19 17 23 23 C 1.38635 * 120.50290 * 359.66652 * 12 11 10 24 24 C 1.37613 * 120.24630 * 0.05053 * 23 12 11 25 25 H 0.97006 * 120.00158 * 185.10977 * 1 2 3 26 26 H 1.07994 * 120.13347 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.87342 * 180.27504 * 11 10 9 28 28 H 1.08997 * 109.47383 * 29.96998 * 13 12 11 29 29 H 1.09001 * 109.47345 * 149.97908 * 13 12 11 30 30 H 1.09001 * 117.49694 * 0.02562 * 19 17 15 31 31 H 1.08997 * 117.49701 * 145.02064 * 19 17 15 32 32 H 1.08005 * 119.87690 * 180.02562 * 23 12 11 33 33 H 1.08009 * 120.12700 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3772 2.1114 1.3940 5 1 1.5004 2.6176 -0.8095 6 1 3.5915 1.4103 -0.5846 7 6 2.0079 -1.2120 0.0005 8 1 1.5173 -2.1189 -0.3204 9 6 3.3573 -1.2490 0.4214 10 6 3.8498 -0.2749 1.3094 11 6 5.1634 -0.3242 1.7168 12 6 6.0035 -1.3215 1.2463 13 6 7.4418 -1.3608 1.6945 14 8 8.2551 -0.5790 0.7804 15 6 9.5703 -0.5111 1.0405 16 8 10.0266 -1.0857 2.0004 17 6 10.4775 0.2816 0.1352 18 1 10.0393 1.1797 -0.3000 19 6 11.4835 -0.4972 -0.7146 20 6 11.9665 0.3202 0.4852 21 9 12.6613 1.5054 0.2217 22 9 12.3814 -0.3827 1.6213 23 6 5.5305 -2.2833 0.3671 24 6 4.2191 -2.2570 -0.0492 25 1 -0.4851 -0.8367 0.0748 26 1 3.1984 0.5060 1.6730 27 1 5.5425 0.4198 2.4018 28 1 7.5211 -0.9440 2.6985 29 1 7.7924 -2.3929 1.7007 30 1 11.4890 -1.5830 -0.6191 31 1 11.7073 -0.1116 -1.7092 32 1 6.1937 -3.0560 0.0072 33 1 3.8526 -3.0070 -0.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296795253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:05 Heat of formation + Delta-G solvation = -139.724819 kcal Electronic energy + Delta-G solvation = -20830.043844 eV Core-core repulsion = 17071.271255 eV Total energy + Delta-G solvation = -3758.772588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.085 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.97147 -47.61525 -40.43485 -38.09834 -36.79191 -35.72058 -34.00065 -31.31514 -29.85656 -27.63848 -25.35834 -23.26377 -22.87898 -21.73384 -20.70661 -20.15390 -18.65670 -18.28461 -17.29591 -17.10187 -16.36363 -16.22599 -15.82177 -15.08277 -14.56569 -14.34370 -14.24454 -13.97575 -13.84756 -13.73294 -13.28306 -13.05447 -12.55650 -12.45814 -12.40342 -11.89746 -11.61508 -11.44317 -10.94349 -10.75048 -10.60042 -10.47944 -10.28725 -10.17001 -9.89891 -9.45935 -9.20077 -7.87004 -7.79111 -7.46481 -4.70670 1.82415 2.08761 2.55828 2.60349 2.71736 3.03501 3.15002 3.30257 3.49279 3.79108 3.93307 4.10263 4.21495 4.39056 4.78693 4.99562 5.20254 5.29533 5.30840 5.44500 5.45831 5.83741 5.95479 6.00216 6.42784 6.57342 6.70081 6.86783 7.18146 7.33302 7.42534 7.60372 7.68105 7.77499 7.83717 8.24971 8.39840 8.60235 9.83024 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.003428 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.268846 B = 8165.445106 C = 8579.183436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.043 3.957 3 Si 1.073 2.927 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.079 0.921 9 C 0.104 3.896 10 C -0.251 4.251 11 C -0.043 4.043 12 C -0.246 4.246 13 C 0.136 3.864 14 O -0.342 6.342 15 C 0.484 3.516 16 O -0.498 6.498 17 C -0.170 4.170 18 H 0.161 0.839 19 C -0.143 4.143 20 C 0.229 3.771 21 F -0.153 7.153 22 F -0.139 7.139 23 C -0.051 4.051 24 C -0.222 4.222 25 H 0.289 0.711 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 1.308 -1.907 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.178 4.178 3 Si 0.899 3.101 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.097 0.903 9 C 0.101 3.899 10 C -0.270 4.270 11 C -0.062 4.062 12 C -0.247 4.247 13 C 0.065 3.935 14 O -0.258 6.258 15 C 0.325 3.675 16 O -0.387 6.387 17 C -0.190 4.190 18 H 0.178 0.822 19 C -0.181 4.181 20 C 0.192 3.808 21 F -0.134 7.134 22 F -0.119 7.119 23 C -0.070 4.070 24 C -0.241 4.241 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.112 0.888 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.289 2.708 -1.655 17.578 hybrid contribution 0.047 -1.726 0.334 1.759 sum 17.336 0.982 -1.320 17.414 Atomic orbital electron populations 1.70541 1.08307 1.33005 1.30654 1.27399 0.95582 1.04777 0.90049 0.83583 0.76073 0.72775 0.77678 1.20381 1.21672 1.18322 1.20795 0.96017 0.97363 1.38991 0.90258 1.17794 0.92832 0.90609 0.88674 1.20969 0.96094 1.04232 1.05697 1.20454 0.93523 0.95232 0.96957 1.18627 0.91740 1.03247 1.11095 1.21782 0.87416 0.93702 0.90639 1.86697 1.17618 1.66866 1.54627 1.21995 0.82958 0.78840 0.83672 1.90728 1.76666 1.42972 1.28319 1.23187 0.89833 1.04104 1.01919 0.82168 1.24349 0.95634 1.01609 0.96471 1.19564 0.90454 0.82977 0.87842 1.93064 1.80241 1.46475 1.93585 1.93133 1.90993 1.76967 1.50797 1.20486 0.95323 0.96330 0.94815 1.20961 0.93463 1.03589 1.06064 0.89995 0.87834 0.88587 0.91586 0.91629 0.85139 0.84309 0.88763 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.87 13.65 55.55 0.76 -20.11 16 2 C 0.04 1.10 5.40 -17.34 -0.09 1.00 16 3 Si 1.07 23.58 24.83 -169.99 -4.22 19.36 16 4 H -0.28 -5.79 6.64 56.52 0.38 -5.41 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.26 -5.69 6.83 56.52 0.39 -5.30 16 7 C -0.50 -13.11 9.44 -37.74 -0.36 -13.47 16 8 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.10 2.58 5.20 -106.83 -0.56 2.02 16 10 C -0.25 -5.88 7.21 -38.87 -0.28 -6.16 16 11 C -0.04 -0.91 9.67 -39.66 -0.38 -1.30 16 12 C -0.25 -4.94 5.54 -104.33 -0.58 -5.52 16 13 C 0.14 2.34 5.58 36.01 0.20 2.54 16 14 O -0.34 -5.62 10.20 -39.27 -0.40 -6.02 16 15 C 0.48 7.01 7.74 36.00 0.28 7.29 16 16 O -0.50 -8.44 14.90 -18.75 -0.28 -8.72 16 17 C -0.17 -1.75 6.29 -91.77 -0.58 -2.33 16 18 H 0.16 1.30 8.14 -51.93 -0.42 0.88 16 19 C -0.14 -1.07 10.20 -26.73 -0.27 -1.34 16 20 C 0.23 2.39 5.19 -26.73 -0.14 2.25 16 21 F -0.15 -1.59 17.60 2.25 0.04 -1.55 16 22 F -0.14 -1.86 15.72 2.25 0.04 -1.82 16 23 C -0.05 -1.05 9.67 -39.66 -0.38 -1.43 16 24 C -0.22 -5.03 9.80 -38.88 -0.38 -5.41 16 25 H 0.29 7.25 8.73 -40.82 -0.36 6.90 16 26 H 0.10 2.39 4.26 -52.49 -0.22 2.17 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 29 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 30 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -28.43 300.19 -6.28 -34.71 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.22 Total: 1.47 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -3.52 Total: -21.85 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.76 Total: -20.11 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.68 Total: -14.73 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.22 Total: 19.36 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.43 -6.28 -34.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296795253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.019 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds