Wall clock time and date at job start Tue Mar 31 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38298 * 119.92411 * 2 1 4 4 C 1.38121 * 120.09230 * 180.02562 * 3 2 1 5 5 C 1.38856 * 119.94072 * 359.97438 * 4 3 2 6 6 N 1.39969 * 120.07327 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00244 * 24.80891 * 6 5 4 8 8 O 1.21289 * 119.99793 * 5.57308 * 7 6 5 9 9 C 1.50702 * 120.00014 * 185.57721 * 7 6 5 10 10 N 1.46500 * 109.46892 * 179.97438 * 9 7 6 11 11 C 1.46500 * 120.00223 * 90.00105 * 10 9 7 12 12 C 1.36941 * 120.00093 * 269.99656 * 10 9 7 13 13 H 1.08000 * 119.99504 * 24.96192 * 12 10 9 14 14 C 1.38815 * 120.00171 * 204.95914 * 12 10 9 15 15 N 1.31622 * 119.99672 * 5.22761 * 14 12 10 16 16 Si 1.86795 * 119.99986 * 185.22106 * 14 12 10 17 17 H 1.48504 * 109.46837 * 90.00335 * 16 14 12 18 18 H 1.48493 * 109.47050 * 209.99951 * 16 14 12 19 19 H 1.48496 * 109.47175 * 330.00477 * 16 14 12 20 20 C 1.38960 * 119.85249 * 359.97438 * 5 4 3 21 21 Cl 1.73593 * 120.04742 * 180.02562 * 20 5 4 22 22 C 1.38231 * 119.90306 * 0.28085 * 20 5 4 23 23 H 1.08997 * 109.47132 * 89.99743 * 1 2 3 24 24 H 1.08994 * 109.46881 * 209.99862 * 1 2 3 25 25 H 1.09006 * 109.46851 * 329.99603 * 1 2 3 26 26 H 1.07996 * 119.95659 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.03080 * 179.97438 * 4 3 2 28 28 H 0.97002 * 119.99883 * 204.80243 * 6 5 4 29 29 H 1.09000 * 109.47161 * 299.99532 * 9 7 6 30 30 H 1.09000 * 109.47131 * 59.99686 * 9 7 6 31 31 H 1.08999 * 109.47295 * 95.00369 * 11 10 9 32 32 H 1.08997 * 109.47359 * 215.00373 * 11 10 9 33 33 H 1.09004 * 109.46914 * 335.00382 * 11 10 9 34 34 H 0.97001 * 120.00027 * 179.97438 * 15 14 12 35 35 H 1.07998 * 119.96675 * 179.72103 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1986 0.0000 4 6 3.5781 1.2027 -0.0005 5 6 4.2746 0.0015 -0.0005 6 7 5.6743 0.0023 -0.0016 7 6 6.3480 1.0624 0.4871 8 8 5.7457 1.9707 1.0195 9 6 7.8495 1.1193 0.3721 10 7 8.3386 2.3624 0.9735 11 6 8.6912 2.3993 2.3950 12 6 8.4663 3.4899 0.2070 13 1 7.8648 3.6094 -0.6821 14 6 9.3687 4.4793 0.5726 15 7 10.1742 4.2896 1.5962 16 14 9.4399 6.0798 -0.3880 17 1 8.5014 7.0606 0.2141 18 1 10.8209 6.6236 -0.3419 19 1 9.0540 5.8275 -1.7995 20 6 3.5790 -1.2015 0.0005 21 17 4.4447 -2.7062 0.0012 22 6 2.1967 -1.1982 -0.0043 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6549 2.1328 -0.0004 27 1 4.1158 2.1392 -0.0010 28 1 6.1595 -0.7601 -0.3541 29 1 8.2863 0.2670 0.8926 30 1 8.1348 1.0879 -0.6795 31 1 9.7618 2.2288 2.5083 32 1 8.4328 3.3742 2.8083 33 1 8.1413 1.6222 2.9259 34 1 10.8050 4.9808 1.8515 35 1 1.6551 -2.1326 -0.0080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299639583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:45 Heat of formation + Delta-G solvation = 10.246716 kcal Electronic energy + Delta-G solvation = -19478.092030 eV Core-core repulsion = 16309.912127 eV Total energy + Delta-G solvation = -3168.179903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30063 -38.47340 -36.57030 -35.39208 -34.52923 -31.77353 -31.10076 -30.72677 -27.76528 -26.04016 -25.65908 -23.11553 -22.18425 -21.10221 -19.83872 -17.79441 -16.76848 -16.63483 -15.88150 -15.31128 -14.90226 -14.52255 -14.24681 -13.99303 -13.73720 -13.43440 -13.29671 -13.10789 -12.72588 -12.48824 -11.96586 -11.79271 -11.51089 -11.37190 -11.19123 -10.99852 -10.88900 -10.72436 -10.39372 -10.14679 -10.02103 -9.94752 -9.28333 -8.78696 -8.54327 -7.82361 -6.82213 -5.75623 -3.25431 1.13946 1.30443 2.06105 3.13359 3.30863 3.40525 3.44600 3.46121 3.75008 4.47750 4.71106 4.83634 5.08737 5.11819 5.26640 5.40795 5.45883 5.50476 5.58711 5.66695 5.76028 5.93456 6.05345 6.18128 6.20026 6.26788 6.49853 6.61477 6.77096 7.03055 7.43259 7.68048 7.73764 7.81038 8.33849 8.68240 9.18734 9.77819 10.25636 11.29140 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.004210 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.971207 B = 6649.002024 C = 7425.081143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.110 4.110 3 C -0.092 4.092 4 C -0.121 4.121 5 C 0.173 3.827 6 N -0.682 5.682 7 C 0.474 3.526 8 O -0.498 6.498 9 C 0.136 3.864 10 N -0.574 5.574 11 C 0.165 3.835 12 C -0.255 4.255 13 H 0.067 0.933 14 C 0.007 3.993 15 N -0.908 5.908 16 Si 0.911 3.089 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C -0.077 4.077 21 Cl -0.074 7.074 22 C -0.091 4.091 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.157 0.843 28 H 0.408 0.592 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.048 0.952 33 H -0.006 1.006 34 H 0.254 0.746 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.739 -12.837 -4.164 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.112 4.112 3 C -0.111 4.111 4 C -0.142 4.142 5 C 0.075 3.925 6 N -0.328 5.328 7 C 0.260 3.740 8 O -0.369 6.369 9 C 0.003 3.997 10 N -0.293 5.293 11 C 0.021 3.979 12 C -0.385 4.385 13 H 0.085 0.915 14 C -0.191 4.191 15 N -0.552 5.552 16 Si 0.740 3.260 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.107 4.107 21 Cl -0.045 7.045 22 C -0.110 4.110 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.175 0.825 28 H 0.244 0.756 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.064 0.936 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.770 -12.080 -3.656 19.428 hybrid contribution 0.262 0.304 -0.577 0.703 sum -14.508 -11.777 -4.233 19.160 Atomic orbital electron populations 1.20712 0.90790 1.02724 1.02179 1.19749 0.96173 0.92405 1.02839 1.21071 0.93701 0.97711 0.98568 1.21536 0.94055 0.98163 1.00429 1.17748 0.84452 0.92161 0.98118 1.44352 1.03408 1.22515 1.62569 1.24116 0.93718 0.80254 0.75926 1.90596 1.69837 1.36501 1.40008 1.20702 0.86989 0.91898 1.00125 1.43616 1.73365 1.05766 1.06537 1.20885 0.97123 0.97890 0.81983 1.19152 1.16330 0.95928 1.07046 0.91545 1.25070 0.96314 0.99490 0.98228 1.70061 1.23375 1.33568 1.28227 0.86164 0.76871 0.83388 0.79541 1.21362 1.21573 1.20414 1.20636 0.92576 0.85390 1.12074 1.98341 1.77032 1.31863 1.97277 1.20637 0.91059 0.98499 1.00836 0.91324 0.91697 0.91469 0.85386 0.82534 0.75631 0.90941 0.89704 0.94652 0.93369 0.98723 0.93606 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.11 -1.24 5.88 -104.59 -0.62 -1.86 16 3 C -0.09 -1.19 9.69 -39.60 -0.38 -1.57 16 4 C -0.12 -1.93 8.72 -39.40 -0.34 -2.27 16 5 C 0.17 2.66 6.43 -83.65 -0.54 2.12 16 6 N -0.68 -10.51 5.19 -9.83 -0.05 -10.56 16 7 C 0.47 9.13 7.70 -10.99 -0.08 9.05 16 8 O -0.50 -11.54 13.60 5.55 0.08 -11.47 16 9 C 0.14 2.69 6.13 -5.19 -0.03 2.65 16 10 N -0.57 -14.60 2.41 -182.50 -0.44 -15.04 16 11 C 0.17 4.21 8.95 59.85 0.54 4.75 16 12 C -0.26 -7.10 9.66 -15.06 -0.15 -7.24 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C 0.01 0.21 5.24 -17.43 -0.09 0.11 16 15 N -0.91 -26.44 10.43 55.49 0.58 -25.86 16 16 Si 0.91 22.10 29.56 -169.99 -5.02 17.07 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.08 -1.02 6.34 -39.32 -0.25 -1.27 16 21 Cl -0.07 -0.85 27.78 -51.86 -1.44 -2.29 16 22 C -0.09 -1.05 9.48 -39.58 -0.38 -1.43 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 27 H 0.16 2.89 5.79 -52.49 -0.30 2.59 16 28 H 0.41 5.15 7.76 -40.82 -0.32 4.83 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.09 1.54 8.04 -51.93 -0.42 1.12 16 31 H 0.04 0.93 7.35 -51.93 -0.38 0.55 16 32 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 33 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 34 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -31.97 313.40 -7.83 -39.79 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.29 Total: 1.09 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.96 Total: 2.54 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.09 Total: -51.46 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.44 Total: -2.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.97 -7.83 -39.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299639583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.041 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds