Wall clock time and date at job start Tue Mar 31 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38280 * 119.93847 * 2 1 4 4 C 1.38104 * 120.07933 * 180.21294 * 3 2 1 5 5 C 1.38900 * 119.95459 * 359.51618 * 4 3 2 6 6 N 1.39926 * 120.05878 * 180.23045 * 5 4 3 7 7 C 1.34780 * 119.99502 * 144.84348 * 6 5 4 8 8 O 1.21279 * 120.00562 * 4.33892 * 7 6 5 9 9 C 1.50701 * 119.99679 * 184.32964 * 7 6 5 10 10 N 1.46504 * 109.47167 * 180.02562 * 9 7 6 11 11 C 1.46494 * 120.00019 * 90.00051 * 10 9 7 12 12 C 1.36938 * 119.99478 * 269.99994 * 10 9 7 13 13 H 1.08003 * 120.00297 * 24.89117 * 12 10 9 14 14 C 1.38819 * 119.99468 * 204.88607 * 12 10 9 15 15 N 1.31611 * 120.00095 * 5.60861 * 14 12 10 16 16 Si 1.86807 * 119.99502 * 185.60417 * 14 12 10 17 17 H 1.48496 * 109.46897 * 90.00274 * 16 14 12 18 18 H 1.48500 * 109.46634 * 210.00257 * 16 14 12 19 19 H 1.48492 * 109.47390 * 330.00106 * 16 14 12 20 20 C 1.38822 * 119.87611 * 0.25220 * 5 4 3 21 21 C 1.38248 * 119.91580 * 359.97438 * 20 5 4 22 22 Cl 1.73603 * 119.97778 * 179.97438 * 21 20 5 23 23 H 1.09002 * 109.46792 * 270.25076 * 1 2 3 24 24 H 1.09004 * 109.46817 * 30.24721 * 1 2 3 25 25 H 1.08996 * 109.47740 * 150.25447 * 1 2 3 26 26 H 1.07994 * 119.95748 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.01698 * 179.79299 * 4 3 2 28 28 H 0.96995 * 120.00175 * 324.84970 * 6 5 4 29 29 H 1.08998 * 109.47253 * 300.00379 * 9 7 6 30 30 H 1.08999 * 109.47459 * 60.00326 * 9 7 6 31 31 H 1.09008 * 109.47241 * 95.01916 * 11 10 9 32 32 H 1.09001 * 109.47268 * 215.01645 * 11 10 9 33 33 H 1.09003 * 109.47227 * 335.01808 * 11 10 9 34 34 H 0.97004 * 119.99921 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.04463 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5781 1.2017 -0.0044 5 6 4.2747 0.0000 0.0012 6 7 5.6739 0.0009 0.0016 7 6 6.3482 -0.9499 0.6783 8 8 5.7448 -1.8511 1.2212 9 6 7.8519 -0.8934 0.7601 10 7 8.3415 -2.0304 1.5436 11 6 8.6699 -3.2925 0.8763 12 6 8.4920 -1.9134 2.8996 13 1 7.9077 -1.1887 3.4473 14 6 9.3955 -2.7263 3.5703 15 7 10.1860 -3.5309 2.8922 16 14 9.4895 -2.6778 5.4354 17 1 8.5490 -3.6763 6.0044 18 1 10.8732 -2.9973 5.8697 19 1 9.1210 -1.3215 5.9146 20 6 3.5800 -1.2019 0.0061 21 6 2.1975 -1.1992 0.0058 22 17 1.3272 -2.7013 0.0112 23 1 -0.3633 0.0045 1.0277 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3634 -0.8922 -0.5098 26 1 1.6554 2.1326 0.0004 27 1 4.1161 2.1381 -0.0078 28 1 6.1586 0.6858 -0.4850 29 1 8.2724 -0.9369 -0.2445 30 1 8.1550 0.0368 1.2408 31 1 9.7370 -3.3198 0.6553 32 1 8.4128 -4.1265 1.5293 33 1 8.1045 -3.3705 -0.0523 34 1 10.8176 -4.0987 3.3609 35 1 4.1188 -2.1379 0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299645457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:49 Heat of formation + Delta-G solvation = 10.351084 kcal Electronic energy + Delta-G solvation = -19422.204356 eV Core-core repulsion = 16254.028978 eV Total energy + Delta-G solvation = -3168.175377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24379 -38.50675 -36.44986 -35.32883 -34.48789 -31.80965 -31.12597 -30.73852 -27.73810 -26.01677 -25.64592 -23.06993 -22.18839 -21.09816 -19.89595 -17.77970 -16.76698 -16.60342 -15.52677 -15.51990 -14.95207 -14.51741 -14.41707 -14.11389 -13.66725 -13.46427 -13.31807 -12.91737 -12.50648 -12.44244 -11.95601 -11.77928 -11.66068 -11.35981 -11.22723 -10.87989 -10.81575 -10.71203 -10.39885 -10.03501 -9.95460 -9.89450 -9.30880 -8.75015 -8.53758 -7.93351 -6.81465 -5.74935 -3.24432 1.12668 1.29659 2.16670 3.15164 3.34196 3.42375 3.45730 3.47468 3.71820 4.48940 4.70500 4.84682 5.02669 5.21033 5.29482 5.39966 5.49213 5.50625 5.55287 5.65131 5.84939 5.87485 6.05153 6.15569 6.20411 6.33134 6.40341 6.49835 6.75956 7.04121 7.43205 7.69560 7.75395 7.81872 8.34878 8.72858 9.19602 9.78741 10.26092 11.29850 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.003993 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.557352 B = 7011.412528 C = 7259.049673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.092 4.092 4 C -0.147 4.147 5 C 0.167 3.833 6 N -0.688 5.688 7 C 0.471 3.529 8 O -0.499 6.499 9 C 0.138 3.862 10 N -0.574 5.574 11 C 0.165 3.835 12 C -0.254 4.254 13 H 0.066 0.934 14 C 0.007 3.993 15 N -0.908 5.908 16 Si 0.910 3.090 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.279 1.279 20 C -0.114 4.114 21 C -0.016 4.016 22 Cl -0.070 7.070 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.408 0.592 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.047 0.953 33 H -0.006 1.006 34 H 0.254 0.746 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.807 10.176 -9.701 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.111 4.111 4 C -0.168 4.168 5 C 0.071 3.929 6 N -0.336 5.336 7 C 0.257 3.743 8 O -0.370 6.370 9 C 0.004 3.996 10 N -0.293 5.293 11 C 0.021 3.979 12 C -0.384 4.384 13 H 0.084 0.916 14 C -0.191 4.191 15 N -0.553 5.553 16 Si 0.740 3.260 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.135 4.135 21 C -0.043 4.043 22 Cl -0.041 7.041 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.243 0.757 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.064 0.936 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.017 9.154 -9.163 19.831 hybrid contribution 0.139 0.153 0.853 0.877 sum -14.878 9.307 -8.310 19.417 Atomic orbital electron populations 1.20792 0.90592 1.03008 1.02596 1.19662 0.96544 0.91397 1.03220 1.20696 0.93347 0.96921 1.00097 1.21009 0.94402 0.96834 1.04557 1.17745 0.84277 0.92870 0.98008 1.44247 1.03383 1.33061 1.52872 1.24133 0.93707 0.80369 0.76140 1.90647 1.69846 1.33315 1.43211 1.20687 0.87008 0.94415 0.97488 1.43615 1.73529 1.07763 1.04400 1.20884 0.97139 0.87574 0.92297 1.19152 1.16641 1.20188 0.82391 0.91594 1.25057 0.96364 0.99280 0.98390 1.70054 1.23880 1.27525 1.33813 0.86171 0.76855 0.77941 0.85048 1.21348 1.21564 1.20424 1.21221 0.91806 0.99567 1.00864 1.20618 0.92011 0.86536 1.05176 1.98347 1.76446 1.32504 1.96852 0.91065 0.91449 0.91107 0.85121 0.85246 0.75694 0.90940 0.89866 0.94642 0.93406 0.98728 0.93616 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.61 36.01 0.35 -0.69 16 2 C -0.11 -1.27 5.89 -104.55 -0.62 -1.89 16 3 C -0.09 -0.98 9.69 -39.61 -0.38 -1.36 16 4 C -0.15 -1.69 9.97 -39.39 -0.39 -2.09 16 5 C 0.17 2.43 6.30 -83.70 -0.53 1.90 16 6 N -0.69 -9.73 5.34 -9.87 -0.05 -9.78 16 7 C 0.47 8.92 7.74 -10.98 -0.09 8.84 16 8 O -0.50 -11.79 13.88 5.56 0.08 -11.71 16 9 C 0.14 2.65 6.13 -5.19 -0.03 2.62 16 10 N -0.57 -14.61 2.41 -182.50 -0.44 -15.05 16 11 C 0.17 4.19 8.95 59.84 0.54 4.73 16 12 C -0.25 -7.15 9.66 -15.06 -0.15 -7.29 16 13 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 14 C 0.01 0.21 5.24 -17.43 -0.09 0.12 16 15 N -0.91 -26.56 10.45 55.49 0.58 -25.98 16 16 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.11 -1.85 8.48 -39.36 -0.33 -2.18 16 21 C -0.02 -0.23 6.31 -39.52 -0.25 -0.48 16 22 Cl -0.07 -0.96 27.28 -51.86 -1.41 -2.38 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 25 H 0.07 0.66 6.89 -51.93 -0.36 0.30 16 26 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.41 4.08 8.82 -40.82 -0.36 3.72 16 29 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 30 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 31 H 0.04 0.93 7.35 -51.92 -0.38 0.55 16 32 H 0.05 1.34 7.26 -51.93 -0.38 0.96 16 33 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.15 2.84 6.24 -52.49 -0.33 2.51 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -33.31 313.39 -7.82 -41.12 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.29 Total: -0.51 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.97 Total: 2.22 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.09 Total: -50.81 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.41 Total: -2.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.31 -7.82 -41.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299645457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.475 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds