Wall clock time and date at job start Tue Mar 31 2020 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38131 * 120.03310 * 2 1 4 4 C 1.38355 * 120.06079 * 180.31711 * 3 2 1 5 5 Cl 1.73603 * 119.93960 * 179.69870 * 4 3 2 6 6 C 1.38400 * 120.12690 * 359.67908 * 4 3 2 7 7 C 1.38092 * 120.05813 * 0.02562 * 6 4 3 8 8 C 1.38871 * 120.02928 * 179.71787 * 2 1 3 9 9 N 1.39745 * 120.06433 * 359.97438 * 8 2 1 10 10 C 1.46499 * 120.00107 * 179.72679 * 9 8 2 11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46828 * 90.00241 * 19 17 15 21 21 H 1.48495 * 109.46968 * 209.99597 * 19 17 15 22 22 H 1.48499 * 109.47437 * 330.00066 * 19 17 15 23 23 H 1.08995 * 109.47487 * 270.28177 * 1 2 3 24 24 H 1.09010 * 109.46998 * 30.28084 * 1 2 3 25 25 H 1.08998 * 109.47224 * 150.27928 * 1 2 3 26 26 H 1.08007 * 119.96700 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.97118 * 179.97438 * 6 4 3 28 28 H 1.07994 * 120.02789 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99472 * 359.71801 * 9 8 2 30 30 H 1.09002 * 109.47391 * 59.99564 * 10 9 8 31 31 H 1.09001 * 109.46813 * 299.99621 * 10 9 8 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 34 34 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 35 35 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5819 1.1965 -0.0066 5 17 4.4475 2.7013 -0.0145 6 6 4.2771 -0.0002 -0.0066 7 6 3.5911 -1.1986 -0.0004 8 6 2.2020 -1.2023 0.0059 9 7 1.5052 -2.4136 0.0124 10 6 2.2397 -3.6812 0.0126 11 6 1.2623 -4.8282 0.0208 12 8 0.0695 -4.6084 0.0256 13 7 1.7136 -6.0982 0.0219 14 6 0.7633 -7.2131 0.0293 15 6 1.5189 -8.5170 0.0297 16 1 2.5989 -8.5154 0.0252 17 6 0.8314 -9.7122 0.0356 18 7 -0.4837 -9.7143 0.0405 19 14 1.7680 -11.3284 0.0353 20 1 2.0224 -11.7533 1.4353 21 1 0.9639 -12.3663 -0.6586 22 1 3.0621 -11.1505 -0.6710 23 1 -0.3634 0.0051 1.0276 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6583 2.1312 0.0004 27 1 5.3570 0.0033 -0.0122 28 1 4.1341 -2.1321 -0.0008 29 1 0.5352 -2.4151 0.0169 30 1 2.8706 -3.7355 0.8999 31 1 2.8624 -3.7404 -0.8801 32 1 2.6675 -6.2739 0.0178 33 1 0.1408 -7.1541 0.9222 34 1 0.1323 -7.1586 -0.8578 35 1 -0.9674 -10.5551 0.0451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304486158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:53 Heat of formation + Delta-G solvation = -30.508325 kcal Electronic energy + Delta-G solvation = -18603.253412 eV Core-core repulsion = 15433.306238 eV Total energy + Delta-G solvation = -3169.947174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01771 -38.93876 -36.69535 -35.12887 -34.30326 -32.91827 -32.46040 -29.99980 -28.06222 -27.02803 -25.98651 -22.92417 -21.89049 -21.36289 -19.92296 -18.11795 -16.99993 -16.43990 -15.99488 -15.46168 -15.44739 -15.16156 -14.50540 -14.23694 -14.16723 -13.67595 -13.30833 -13.20881 -12.85312 -12.75580 -12.64979 -12.06708 -11.91805 -11.78466 -11.47006 -11.45043 -11.07035 -10.95710 -10.84127 -10.40975 -9.95727 -9.51109 -9.36003 -8.98671 -8.84796 -8.08162 -7.44722 -6.25247 -4.32998 1.17467 1.28948 2.16132 3.07358 3.16993 3.19017 3.25952 3.28098 3.57726 3.97444 4.28561 4.61671 4.68673 5.03340 5.10672 5.11208 5.15291 5.30760 5.34464 5.37651 5.43827 5.53131 5.70317 5.94092 6.04538 6.12099 6.24980 6.54312 7.06873 7.17829 7.23211 7.38124 7.53860 7.66163 7.86056 8.41709 8.62377 8.86955 9.33742 10.84856 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.041578 B = 0.002627 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.272623 B =10657.582354 C =11305.101115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.152 4.152 3 C -0.061 4.061 4 C -0.096 4.096 5 Cl -0.088 7.088 6 C -0.064 4.064 7 C -0.189 4.189 8 C 0.231 3.769 9 N -0.725 5.725 10 C 0.100 3.900 11 C 0.493 3.507 12 O -0.553 6.553 13 N -0.705 5.705 14 C 0.249 3.751 15 C -0.546 4.546 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.414 0.586 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.394 0.606 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 19.951 -0.088 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.157 4.157 3 C -0.081 4.081 4 C -0.125 4.125 5 Cl -0.060 7.060 6 C -0.083 4.083 7 C -0.212 4.212 8 C 0.125 3.875 9 N -0.357 5.357 10 C -0.029 4.029 11 C 0.277 3.723 12 O -0.433 6.433 13 N -0.353 5.353 14 C 0.129 3.871 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.254 0.746 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.227 0.773 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.712 19.851 -0.092 21.297 hybrid contribution 0.691 -0.976 0.010 1.196 sum 8.404 18.875 -0.081 20.662 Atomic orbital electron populations 1.20635 0.90588 1.02858 1.02446 1.19284 0.96187 0.90892 1.09306 1.20613 0.91761 0.97681 0.98018 1.20525 0.92157 0.86531 1.13252 1.98334 1.77108 1.33041 1.97498 1.20730 0.99879 0.90213 0.97472 1.20599 0.91964 0.98335 1.10336 1.17728 0.91302 0.85618 0.92891 1.44617 1.09536 1.01271 1.80325 1.21175 0.94777 0.83678 1.03240 1.20310 0.89339 0.84684 0.77997 1.90657 1.16649 1.84588 1.51390 1.46419 1.11492 1.05844 1.71506 1.19169 0.88267 0.81749 0.97928 1.21198 0.93302 0.90323 1.53622 0.91778 1.24958 0.94938 0.99541 0.94554 1.69965 1.06197 1.27420 1.48603 0.86391 0.79619 0.82482 0.78290 1.20399 1.20953 1.19694 0.91200 0.91299 0.91519 0.85272 0.85268 0.85089 0.74594 0.89388 0.89402 0.77346 0.95343 0.95328 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.57 36.00 0.34 -0.70 16 2 C -0.15 -1.69 5.90 -104.43 -0.62 -2.30 16 3 C -0.06 -0.64 9.48 -39.58 -0.38 -1.01 16 4 C -0.10 -1.02 6.32 -39.48 -0.25 -1.27 16 5 Cl -0.09 -0.87 28.95 -51.86 -1.50 -2.38 16 6 C -0.06 -0.65 9.82 -39.58 -0.39 -1.03 16 7 C -0.19 -2.02 9.31 -39.38 -0.37 -2.38 16 8 C 0.23 2.74 6.63 -83.76 -0.56 2.19 16 9 N -0.73 -9.42 5.61 -59.80 -0.34 -9.75 16 10 C 0.10 1.26 5.39 -5.19 -0.03 1.23 16 11 C 0.49 8.87 7.90 -10.98 -0.09 8.78 16 12 O -0.55 -12.14 15.67 5.56 0.09 -12.06 16 13 N -0.70 -13.59 5.55 -61.47 -0.34 -13.93 16 14 C 0.25 6.29 5.43 -5.19 -0.03 6.26 16 15 C -0.55 -14.24 9.28 -34.44 -0.32 -14.56 16 16 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.88 -25.41 13.29 55.43 0.74 -24.67 16 19 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 25 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 26 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 27 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.13 1.18 6.73 -52.49 -0.35 0.83 16 29 H 0.41 5.85 5.44 -40.82 -0.22 5.62 16 30 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 31 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 32 H 0.39 6.31 8.32 -40.82 -0.34 5.97 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -30.32 317.88 -8.50 -38.82 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.15 Total: 7.09 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.77 Total: -3.17 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.06 Total: -48.35 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.32 -8.50 -38.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304486158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.314 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds