Wall clock time and date at job start Tue Mar 31 2020 06:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38308 * 119.92238 * 2 1 4 4 C 1.38189 * 120.05292 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 120.04181 * 179.97438 * 4 3 2 6 6 C 1.38986 * 119.90808 * 359.97438 * 4 3 2 7 7 N 1.40005 * 120.06800 * 180.02562 * 6 4 3 8 8 C 1.34780 * 119.99945 * 204.77204 * 7 6 4 9 9 O 1.21589 * 119.99981 * 5.63202 * 8 7 6 10 10 N 1.34778 * 120.00358 * 185.63094 * 8 7 6 11 11 C 1.46500 * 120.00322 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47196 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99916 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99728 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99527 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00114 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47396 * 90.00340 * 16 14 12 18 18 H 1.48508 * 109.47372 * 210.00228 * 16 14 12 19 19 H 1.48501 * 109.47382 * 329.99973 * 16 14 12 20 20 C 1.38802 * 119.85589 * 0.02562 * 6 4 3 21 21 C 1.38160 * 119.94042 * 0.02562 * 20 6 4 22 22 C 1.50703 * 119.95374 * 180.25397 * 21 20 6 23 23 H 1.08999 * 109.47538 * 270.02506 * 1 2 3 24 24 H 1.08997 * 109.47109 * 30.03254 * 1 2 3 25 25 H 1.09005 * 109.46780 * 150.02587 * 1 2 3 26 26 H 1.07997 * 119.97100 * 359.96823 * 3 2 1 27 27 H 0.97002 * 120.00351 * 24.77798 * 7 6 4 28 28 H 0.97000 * 119.99725 * 0.02562 * 10 8 7 29 29 H 1.09001 * 109.47020 * 300.00427 * 11 10 8 30 30 H 1.08999 * 109.46509 * 60.00023 * 11 10 8 31 31 H 0.96998 * 119.99479 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.02825 * 180.02562 * 20 6 4 33 33 H 1.08998 * 109.46999 * 269.72798 * 22 21 20 34 34 H 1.09004 * 109.46627 * 29.72422 * 22 21 20 35 35 H 1.08991 * 109.47249 * 149.72509 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5788 1.2019 0.0005 5 17 4.4445 2.7066 -0.0001 6 6 4.2746 -0.0013 0.0016 7 7 5.6746 -0.0020 0.0027 8 6 6.3483 -1.0624 -0.4854 9 8 5.7447 -1.9728 -1.0194 10 7 7.6911 -1.1137 -0.3816 11 6 8.4235 -2.2660 -0.9126 12 6 9.8990 -2.0786 -0.6704 13 1 10.2555 -1.1902 -0.1705 14 6 10.7938 -3.0413 -1.0870 15 7 12.0814 -2.8779 -0.8751 16 14 10.1770 -4.5783 -1.9510 17 1 10.1338 -4.3391 -3.4159 18 1 11.0931 -5.7106 -1.6612 19 1 8.8136 -4.9073 -1.4627 20 6 3.5783 -1.2021 0.0016 21 6 2.1967 -1.1981 0.0000 22 6 1.4405 -2.5017 0.0058 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3633 -0.8903 -0.5135 26 1 1.6552 2.1330 -0.0005 27 1 6.1598 0.7606 0.3548 28 1 8.1727 -0.3876 0.0448 29 1 8.0858 -3.1734 -0.4118 30 1 8.2387 -2.3518 -1.9834 31 1 12.7109 -3.5550 -1.1685 32 1 4.1162 -2.1387 0.0029 33 1 1.2552 -2.8187 -1.0205 34 1 2.0297 -3.2611 0.5199 35 1 0.4900 -2.3680 0.5221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334701023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:26 Heat of formation + Delta-G solvation = -20.804654 kcal Electronic energy + Delta-G solvation = -19219.729130 eV Core-core repulsion = 16050.202739 eV Total energy + Delta-G solvation = -3169.526392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56101 -38.93834 -36.68916 -35.26464 -34.34639 -32.55504 -32.31677 -31.42821 -28.15935 -27.26919 -25.98343 -22.89558 -22.18283 -20.88939 -20.38559 -18.48004 -17.36766 -16.51132 -15.94547 -15.79889 -14.96705 -14.81432 -14.41616 -14.20325 -13.85298 -13.58656 -13.24466 -13.11616 -12.94331 -12.81514 -12.45115 -12.38479 -12.21186 -11.67334 -11.45114 -11.20105 -11.03224 -11.00033 -10.80862 -10.18257 -10.01035 -9.64354 -9.51370 -8.82837 -8.65633 -8.34289 -7.79471 -6.24738 -4.27600 1.08730 1.28305 2.04881 2.93260 3.24865 3.32237 3.33758 3.39460 3.77827 4.30238 4.59936 4.64993 4.78572 5.00949 5.05262 5.10571 5.15631 5.41886 5.49434 5.53580 5.56329 5.72714 5.84050 5.94279 6.12154 6.16416 6.43859 6.60784 6.62533 6.97417 7.02113 7.09227 7.22770 7.40494 8.18169 8.49822 8.72823 8.94041 9.34560 10.87133 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.004057 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.180564 B = 6899.310551 C = 7984.288524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C -0.085 4.085 4 C -0.082 4.082 5 Cl -0.073 7.073 6 C 0.195 3.805 7 N -0.687 5.687 8 C 0.694 3.306 9 O -0.582 6.582 10 N -0.712 5.712 11 C 0.237 3.763 12 C -0.545 4.545 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.121 4.121 21 C -0.059 4.059 22 C -0.115 4.115 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.407 0.593 28 H 0.396 0.604 29 H 0.027 0.973 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.783 7.640 3.536 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.104 4.104 4 C -0.112 4.112 5 Cl -0.044 7.044 6 C 0.097 3.903 7 N -0.334 5.334 8 C 0.394 3.606 9 O -0.460 6.460 10 N -0.364 5.364 11 C 0.115 3.885 12 C -0.583 4.583 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.528 5.528 16 Si 0.704 3.296 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.142 4.142 21 C -0.060 4.060 22 C -0.171 4.171 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.150 0.850 27 H 0.243 0.757 28 H 0.229 0.771 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.885 6.783 3.015 23.109 hybrid contribution 0.628 0.252 -0.127 0.688 sum -21.257 7.035 2.888 22.576 Atomic orbital electron populations 1.20744 0.90826 1.02786 1.02169 1.19587 0.96088 0.91833 1.03642 1.20605 0.90902 0.98469 1.00453 1.20550 0.92578 0.85266 1.12762 1.98348 1.76987 1.31777 1.97296 1.17276 0.82428 0.92303 0.98303 1.42839 1.04150 1.21376 1.64999 1.16081 0.82872 0.82096 0.79520 1.90834 1.67655 1.38269 1.49270 1.45482 1.03433 1.25635 1.61804 1.19456 0.91481 0.83458 0.94121 1.21059 0.88351 1.08070 1.40846 0.90199 1.24775 0.94606 0.98146 0.95024 1.69878 1.01429 1.35366 1.46141 0.86810 0.79592 0.82696 0.80548 1.19801 1.20855 1.18441 1.21416 0.93266 0.98240 1.01283 1.19760 0.93124 0.95105 0.97975 1.20828 0.99724 0.93937 1.02653 0.91314 0.91690 0.91244 0.84965 0.75668 0.77084 0.95544 0.96021 0.92186 0.82287 0.90810 0.91175 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.18 36.01 0.33 -0.48 16 2 C -0.11 -1.19 5.88 -104.59 -0.62 -1.81 16 3 C -0.09 -0.95 9.48 -39.57 -0.38 -1.33 16 4 C -0.08 -1.06 6.34 -39.32 -0.25 -1.31 16 5 Cl -0.07 -0.86 27.79 -51.86 -1.44 -2.30 16 6 C 0.20 2.95 6.43 -83.64 -0.54 2.41 16 7 N -0.69 -10.74 5.20 -14.19 -0.07 -10.81 16 8 C 0.69 13.49 8.37 -86.91 -0.73 12.76 16 9 O -0.58 -12.98 13.51 5.29 0.07 -12.91 16 10 N -0.71 -14.36 5.55 -66.41 -0.37 -14.73 16 11 C 0.24 5.74 4.50 -5.19 -0.02 5.72 16 12 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 13 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 16 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 20 C -0.12 -1.85 8.37 -39.40 -0.33 -2.18 16 21 C -0.06 -0.72 5.88 -104.65 -0.62 -1.34 16 22 C -0.11 -1.11 9.18 36.01 0.33 -0.78 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 25 H 0.07 0.47 6.70 -51.93 -0.35 0.12 16 26 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.41 5.39 7.78 -40.82 -0.32 5.07 16 28 H 0.40 7.01 8.34 -40.82 -0.34 6.67 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 30 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.16 2.76 5.79 -52.49 -0.30 2.46 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -31.08 309.86 -8.40 -39.47 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.11 Total: 6.92 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.25 Total: -1.35 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.33 Total: -51.00 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.44 Total: -2.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.08 -8.40 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334701023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.667 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds