Wall clock time and date at job start Tue Mar 31 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38116 * 119.97419 * 2 1 4 4 C 1.38851 * 119.94603 * 180.02562 * 3 2 1 5 5 N 1.39998 * 120.05544 * 179.97438 * 4 3 2 6 6 C 1.34780 * 120.00173 * 326.73753 * 5 4 3 7 7 O 1.21584 * 119.99645 * 354.68184 * 6 5 4 8 8 N 1.34770 * 119.99999 * 174.68862 * 6 5 4 9 9 C 1.46499 * 120.00061 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47360 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00000 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00015 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00308 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99961 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47351 * 90.00549 * 14 12 10 16 16 H 1.48500 * 109.47046 * 210.00144 * 14 12 10 17 17 H 1.48502 * 109.47276 * 330.00029 * 14 12 10 18 18 C 1.38854 * 119.88790 * 0.24973 * 4 3 2 19 19 C 1.38119 * 119.94068 * 359.49121 * 18 4 3 20 20 C 1.50697 * 119.97106 * 180.27158 * 19 18 4 21 21 C 1.38380 * 120.05511 * 0.51259 * 19 18 4 22 22 Cl 1.73603 * 119.94173 * 179.72047 * 21 19 18 23 23 H 1.09002 * 109.47049 * 90.00102 * 1 2 3 24 24 H 1.09005 * 109.47106 * 210.00042 * 1 2 3 25 25 H 1.09004 * 109.47195 * 330.00219 * 1 2 3 26 26 H 1.08002 * 120.02258 * 0.03897 * 3 2 1 27 27 H 0.97001 * 119.99908 * 146.73024 * 5 4 3 28 28 H 0.97003 * 120.00424 * 359.71554 * 8 6 5 29 29 H 1.09002 * 109.47041 * 299.99871 * 9 8 6 30 30 H 1.08999 * 109.47016 * 59.99888 * 9 8 6 31 31 H 0.97002 * 120.00417 * 179.97438 * 13 12 10 32 32 H 1.07995 * 120.03129 * 179.73244 * 18 4 3 33 33 H 1.09002 * 109.47332 * 270.23632 * 20 19 18 34 34 H 1.08999 * 109.46979 * 30.24202 * 20 19 18 35 35 H 1.08998 * 109.46961 * 150.23593 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1964 0.0000 4 6 3.5855 1.1957 -0.0005 5 7 4.2873 2.4071 -0.0011 6 6 3.7803 3.4794 -0.6413 7 8 2.7634 3.3701 -1.2988 8 7 4.4007 4.6725 -0.5528 9 6 3.8500 5.8379 -1.2492 10 6 4.7243 7.0376 -0.9898 11 1 5.6026 6.9415 -0.3688 12 6 4.4035 8.2576 -1.5463 13 7 3.3343 8.3745 -2.3030 14 14 5.4877 9.7445 -1.2254 15 1 6.5401 9.8246 -2.2701 16 1 4.6604 10.9772 -1.2608 17 1 6.1245 9.6140 0.1098 18 6 4.2768 -0.0085 -0.0063 19 6 3.5821 -1.2022 -0.0009 20 6 4.3318 -2.5095 -0.0010 21 6 2.1983 -1.1988 -0.0004 22 17 1.3281 -2.7009 -0.0009 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6569 2.1317 0.0006 27 1 5.1383 2.4748 0.4594 28 1 5.2098 4.7606 -0.0250 29 1 3.8149 5.6381 -2.3202 30 1 2.8426 6.0371 -0.8836 31 1 3.1084 9.2329 -2.6942 32 1 5.3568 -0.0117 -0.0111 33 1 4.5121 -2.8249 -1.0287 34 1 5.2847 -2.3819 0.5125 35 1 3.7406 -3.2673 0.5132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335229808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:32 Heat of formation + Delta-G solvation = -26.010031 kcal Electronic energy + Delta-G solvation = -19015.926355 eV Core-core repulsion = 15846.174241 eV Total energy + Delta-G solvation = -3169.752114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40637 -38.82695 -36.50559 -34.77172 -34.21133 -33.67491 -32.43157 -30.15845 -27.47372 -26.89927 -26.81892 -23.26525 -21.63749 -21.19121 -20.10759 -18.32402 -16.96552 -16.56742 -16.13431 -15.79888 -14.86959 -14.76331 -14.40427 -14.11158 -13.73861 -13.29645 -13.23352 -13.00192 -12.83318 -12.46657 -12.10746 -12.06590 -12.03631 -11.80347 -11.59423 -11.39978 -11.01436 -10.93336 -10.66566 -10.35666 -9.86217 -9.54794 -9.44660 -8.80454 -8.63114 -8.12668 -7.75302 -6.21132 -4.28464 1.16801 1.28862 2.16990 3.05584 3.21482 3.28216 3.30531 3.43630 3.88545 4.27635 4.63509 4.66206 4.82252 5.13217 5.15257 5.25882 5.30771 5.40254 5.46192 5.62794 5.64382 5.70050 5.91503 6.07586 6.15563 6.32389 6.38956 6.56163 6.95711 7.05378 7.32703 7.43904 7.46575 7.75839 7.93391 8.61874 8.77407 9.11118 9.38573 10.88981 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.041508 B = 0.003080 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.405203 B = 9089.214085 C = 9626.204762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.051 4.051 3 C -0.119 4.119 4 C 0.198 3.802 5 N -0.695 5.695 6 C 0.689 3.311 7 O -0.580 6.580 8 N -0.720 5.720 9 C 0.265 3.735 10 C -0.545 4.545 11 H 0.063 0.937 12 C 0.064 3.936 13 N -0.884 5.884 14 Si 0.905 3.095 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.155 4.155 19 C -0.053 4.053 20 C -0.115 4.115 21 C -0.066 4.066 22 Cl -0.078 7.078 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.147 0.853 27 H 0.405 0.595 28 H 0.389 0.611 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.267 0.733 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -19.910 7.127 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.139 4.139 4 C 0.101 3.899 5 N -0.343 5.343 6 C 0.390 3.610 7 O -0.457 6.457 8 N -0.372 5.372 9 C 0.145 3.855 10 C -0.583 4.583 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.176 4.176 19 C -0.055 4.055 20 C -0.172 4.172 21 C -0.093 4.093 22 Cl -0.049 7.049 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.165 0.835 27 H 0.240 0.760 28 H 0.222 0.778 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.207 -19.822 6.378 20.824 hybrid contribution 1.362 0.930 0.487 1.720 sum 1.155 -18.892 6.865 20.134 Atomic orbital electron populations 1.20855 0.90259 1.03198 1.03072 1.19600 0.96686 0.90733 0.98180 1.21107 0.92699 0.98374 1.01754 1.17547 0.91255 0.84682 0.96449 1.42889 1.25131 1.09157 1.57090 1.16170 0.84003 0.80570 0.80295 1.90906 1.25578 1.84031 1.45213 1.45796 1.29548 1.08192 1.53638 1.19071 0.94641 0.79549 0.92266 1.21194 1.10946 0.93616 1.32554 0.91869 1.24941 0.95352 0.98996 0.94671 1.69970 1.24870 1.25567 1.31733 0.86395 0.80083 0.81623 0.78684 1.20440 1.20961 1.19743 1.20613 0.99799 0.89918 1.07260 1.19392 0.91362 0.95655 0.99078 1.20831 0.99847 0.93700 1.02828 1.20513 0.91468 0.86258 1.11099 1.98311 1.76630 1.32822 1.97137 0.90525 0.91012 0.90959 0.83492 0.76036 0.77847 0.95455 0.95435 0.92361 0.85072 0.90757 0.91231 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.61 36.00 0.35 -1.01 16 2 C -0.05 -0.69 5.88 -104.62 -0.62 -1.31 16 3 C -0.12 -1.86 8.31 -39.40 -0.33 -2.19 16 4 C 0.20 2.90 6.28 -83.67 -0.53 2.38 16 5 N -0.70 -10.29 5.35 -14.22 -0.08 -10.36 16 6 C 0.69 13.65 8.30 -86.92 -0.72 12.93 16 7 O -0.58 -13.78 14.03 5.29 0.07 -13.70 16 8 N -0.72 -14.68 5.55 -66.42 -0.37 -15.05 16 9 C 0.27 6.88 5.43 -5.19 -0.03 6.85 16 10 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 16 11 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 13 N -0.88 -25.66 13.29 55.43 0.74 -24.92 16 14 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 18 C -0.15 -1.86 9.62 -39.40 -0.38 -2.24 16 19 C -0.05 -0.62 5.88 -104.61 -0.62 -1.24 16 20 C -0.12 -1.00 9.61 36.00 0.35 -0.66 16 21 C -0.07 -0.83 6.31 -39.48 -0.25 -1.08 16 22 Cl -0.08 -0.85 25.62 -51.86 -1.33 -2.18 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 25 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.15 2.63 6.41 -52.49 -0.34 2.29 16 27 H 0.40 4.47 8.84 -40.82 -0.36 4.11 16 28 H 0.39 6.65 8.34 -40.82 -0.34 6.30 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -31.41 314.73 -8.67 -40.07 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.24 Total: 6.60 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.19 Total: -0.67 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.29 Total: -50.33 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.70 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.33 Total: -2.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.41 -8.67 -40.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335229808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.062 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds