Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47283 * 269.99998 * 3 2 1 5 5 H 1.48506 * 109.47492 * 30.00048 * 3 2 1 6 6 H 1.48498 * 109.47124 * 149.99862 * 3 2 1 7 7 C 1.37870 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00526 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.46513 * 179.97438 * 9 7 2 11 11 C 1.53188 * 109.31187 * 178.61305 * 10 9 7 12 12 N 1.46924 * 108.77531 * 54.63570 * 11 10 9 13 13 C 1.34783 * 120.63066 * 126.36808 * 12 11 10 14 14 O 1.21690 * 119.99822 * 0.13044 * 13 12 11 15 15 C 1.46666 * 119.99907 * 180.13190 * 13 12 11 16 16 C 1.37894 * 126.22313 * 151.21339 * 15 13 12 17 17 C 1.39887 * 107.09812 * 180.21828 * 16 15 13 18 18 Cl 1.73602 * 126.07744 * 179.75342 * 17 16 15 19 19 C 1.35516 * 107.85047 * 359.77683 * 17 16 15 20 20 N 1.35636 * 108.85081 * 0.02562 * 19 17 16 21 21 H 0.96999 * 125.67662 * 179.97438 * 20 19 17 22 22 C 1.46920 * 118.74029 * 306.64266 * 12 11 10 23 23 C 1.52760 * 109.01047 * 53.30739 * 22 12 11 24 24 H 0.96998 * 119.99720 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.44607 * 299.96674 * 9 7 2 26 26 H 1.08998 * 109.49567 * 58.66017 * 10 9 7 27 27 H 1.08997 * 109.49366 * 298.56787 * 10 9 7 28 28 H 1.08999 * 109.58901 * 294.84643 * 11 10 9 29 29 H 1.09001 * 109.70174 * 174.48943 * 11 10 9 30 30 H 1.08008 * 126.45274 * 359.97438 * 16 15 13 31 31 H 1.07999 * 125.57860 * 180.02562 * 19 17 16 32 32 H 1.09001 * 109.59265 * 173.14738 * 22 12 11 33 33 H 1.09002 * 109.58752 * 293.56675 * 22 12 11 34 34 H 1.09009 * 109.56338 * 185.55634 * 23 22 12 35 35 H 1.09001 * 109.35987 * 65.50589 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4767 -4.9866 0.0355 12 7 0.5223 -5.0088 -1.0813 13 6 0.5119 -6.0347 -1.9554 14 8 1.2965 -6.9554 -1.8224 15 6 -0.4449 -6.0414 -3.0670 16 6 -0.2629 -6.6412 -4.2952 17 6 -1.4171 -6.3973 -5.0471 18 17 -1.7083 -6.9278 -6.6742 19 6 -2.2673 -5.6728 -4.2798 20 7 -1.6887 -5.4522 -3.0730 21 1 -2.0844 -4.9585 -2.3377 22 6 -0.4165 -3.8886 -1.2307 23 6 0.3700 -2.5792 -1.2482 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5566 0.8908 26 1 2.8883 -3.5913 0.8781 27 1 2.8556 -3.6193 -0.9019 28 1 0.9373 -5.0711 0.9789 29 1 2.1736 -5.8189 -0.0628 30 1 0.6084 -7.1921 -4.6176 31 1 -3.2456 -5.3275 -4.5800 32 1 -0.9670 -3.9952 -2.1655 33 1 -1.1136 -3.8818 -0.3927 34 1 -0.3226 -1.7375 -1.2594 35 1 0.9974 -2.5465 -2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336507235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = 9.953256 kcal Electronic energy + Delta-G solvation = -19954.045994 eV Core-core repulsion = 16785.853365 eV Total energy + Delta-G solvation = -3168.192628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59054 -39.23375 -36.93914 -36.43405 -33.69099 -31.76602 -30.95856 -30.28490 -29.11698 -26.36695 -23.76474 -22.69597 -21.78218 -20.82956 -20.23746 -19.24228 -17.54011 -16.64343 -16.07695 -15.44167 -15.26313 -14.63409 -14.41531 -14.09403 -13.67500 -13.37498 -13.19282 -12.94900 -12.81928 -12.73655 -12.43322 -11.96229 -11.66637 -11.38431 -11.00580 -10.89743 -10.72646 -10.50626 -10.24245 -9.90625 -9.66431 -9.29443 -9.11562 -8.87677 -8.48532 -8.40059 -8.11178 -6.12749 -4.18493 1.46752 2.13652 2.40915 3.00770 3.17337 3.23113 3.30468 3.33873 3.57640 4.34114 4.66003 4.86266 5.12720 5.15111 5.23639 5.52634 5.67110 5.70853 5.83783 5.87558 6.03125 6.10030 6.28567 6.38491 6.51693 6.56403 6.77371 6.91061 6.98836 7.10236 7.16128 7.54100 7.70151 7.79501 7.91832 8.29873 8.32650 8.84835 9.47348 10.93082 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.004243 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.488216 B = 6596.847763 C = 7333.379036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.595 5.595 13 C 0.583 3.417 14 O -0.541 6.541 15 C -0.021 4.021 16 C -0.108 4.108 17 C -0.124 4.124 18 Cl -0.054 7.054 19 C 0.029 3.971 20 N -0.529 5.529 21 H 0.430 0.570 22 C 0.084 3.916 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -9.625 -6.640 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.163 4.163 11 C -0.009 4.009 12 N -0.327 5.327 13 C 0.370 3.630 14 O -0.418 6.418 15 C -0.134 4.134 16 C -0.134 4.134 17 C -0.157 4.157 18 Cl -0.026 7.026 19 C -0.108 4.108 20 N -0.131 5.131 21 H 0.275 0.725 22 C -0.038 4.038 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.172 0.828 31 H 0.196 0.804 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.342 -9.931 -6.496 13.455 hybrid contribution 0.099 1.305 0.044 1.309 sum -6.243 -8.626 -6.453 12.451 Atomic orbital electron populations 1.69817 1.05893 1.26561 1.50998 1.24950 0.94891 0.99133 0.94931 0.86594 0.79937 0.83349 0.78154 1.20684 1.21214 1.19892 1.21200 0.93040 0.90475 1.50292 0.92585 1.18638 0.92651 0.91915 0.93764 1.22022 0.98968 0.93968 1.01300 1.21768 0.91654 1.00085 0.87402 1.48190 1.36356 1.20375 1.27798 1.17048 0.82956 0.82450 0.80527 1.90802 1.41251 1.36131 1.73658 1.20403 0.88370 1.06494 0.98177 1.21072 0.98682 1.02345 0.91314 1.19904 0.97886 1.09278 0.88665 1.98314 1.96005 1.89538 1.18710 1.21761 0.99949 1.03498 0.85566 1.42810 1.14193 1.42098 1.14005 0.72503 1.22391 0.92533 0.88556 1.00338 1.21947 1.00211 0.94015 0.99997 0.92942 0.95383 0.91832 0.92750 0.91872 0.89947 0.82828 0.80370 0.91233 0.91502 0.87555 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 11.30 55.43 0.63 -22.98 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.51 -13.22 8.56 -34.44 -0.29 -13.51 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.11 2.07 -91.73 -0.19 0.92 16 10 C -0.12 -2.44 5.30 -26.61 -0.14 -2.58 16 11 C 0.11 1.95 6.44 -3.71 -0.02 1.93 16 12 N -0.60 -10.18 2.98 -174.59 -0.52 -10.70 16 13 C 0.58 10.17 7.63 -12.86 -0.10 10.07 16 14 O -0.54 -10.85 16.41 5.20 0.09 -10.76 16 15 C -0.02 -0.31 6.37 -81.98 -0.52 -0.83 16 16 C -0.11 -1.53 10.76 -39.09 -0.42 -1.95 16 17 C -0.12 -1.54 6.66 -39.94 -0.27 -1.80 16 18 Cl -0.05 -0.61 29.30 -51.86 -1.52 -2.13 16 19 C 0.03 0.31 11.87 -16.84 -0.20 0.11 16 20 N -0.53 -6.16 4.74 -9.35 -0.04 -6.20 16 21 H 0.43 4.22 6.46 -40.82 -0.26 3.96 16 22 C 0.08 1.37 5.53 -3.94 -0.02 1.35 16 23 C -0.12 -2.57 5.14 -26.83 -0.14 -2.71 16 24 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 30 H 0.15 2.13 8.06 -52.48 -0.42 1.70 16 31 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.07 0.97 3.88 -51.93 -0.20 0.77 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 2.46 6.03 -51.92 -0.31 2.15 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -28.75 301.61 -8.32 -37.08 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.07 Total: 3.28 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.41 Total: -7.49 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.06 Total: -39.87 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.52 Total: -2.13 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.75 -8.32 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336507235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.031 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds