Wall clock time and date at job start Tue Mar 31 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 N 1.46503 * 109.46869 * 180.02562 * 3 2 1 5 5 C 1.36698 * 120.00025 * 270.00299 * 4 3 2 6 6 H 1.08007 * 119.99785 * 129.05821 * 5 4 3 7 7 C 1.39143 * 120.00168 * 309.05075 * 5 4 3 8 8 N 1.31304 * 119.99789 * 354.07847 * 7 5 4 9 9 Si 1.86798 * 120.00094 * 174.07251 * 7 5 4 10 10 H 1.48497 * 109.47365 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46908 * 120.00195 * 9 7 5 12 12 H 1.48500 * 109.47253 * 240.00112 * 9 7 5 13 13 C 1.34779 * 119.99616 * 89.99731 * 4 3 2 14 14 O 1.21685 * 120.00068 * 4.00310 * 13 4 3 15 15 C 1.46964 * 119.99664 * 183.99561 * 13 4 3 16 16 C 1.36772 * 125.16546 * 172.95394 * 15 13 4 17 17 C 1.36714 * 114.73086 * 180.02562 * 16 15 13 18 18 C 1.36690 * 114.75705 * 359.97438 * 17 16 15 19 19 C 1.47082 * 125.15614 * 179.97438 * 18 17 16 20 20 N 1.34772 * 119.99894 * 180.02562 * 19 18 17 21 21 O 1.21642 * 120.00058 * 0.02562 * 19 18 17 22 22 S 1.75836 * 125.16790 * 352.97881 * 15 13 4 23 23 H 1.09003 * 109.46741 * 300.00324 * 1 2 3 24 24 H 1.08995 * 109.46874 * 59.98980 * 1 2 3 25 25 H 1.08995 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46741 * 239.99676 * 2 1 3 27 27 H 1.09002 * 109.46637 * 120.00746 * 2 1 3 28 28 H 1.08996 * 109.47318 * 60.00824 * 3 2 1 29 29 H 1.08998 * 109.47508 * 299.99790 * 3 2 1 30 30 H 0.97001 * 119.99768 * 184.99868 * 8 7 5 31 31 H 1.07999 * 122.63670 * 0.28701 * 16 15 13 32 32 H 1.08001 * 122.62651 * 180.02562 * 17 16 15 33 33 H 0.97001 * 120.00395 * 0.02562 * 20 19 18 34 34 H 0.97007 * 120.00040 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1891 1.4421 1.1829 6 1 4.9696 0.7157 1.3554 7 6 3.8800 2.3777 2.1654 8 7 3.0144 3.3324 1.9136 9 14 4.6962 2.2754 3.8425 10 1 5.6254 1.1174 3.8710 11 1 5.4557 3.5253 4.1004 12 1 3.6570 2.1027 4.8891 13 6 4.1784 1.4425 -1.1682 14 8 3.5717 1.5162 -2.2204 15 6 5.6454 1.3537 -1.1704 16 6 6.4241 1.2081 -2.2853 17 6 7.7678 1.1480 -2.0406 18 6 8.1143 1.2438 -0.7218 19 6 9.4899 1.2056 -0.2027 20 7 9.7132 1.3090 1.1224 21 8 10.4261 1.0807 -0.9693 22 16 6.6660 1.4180 0.2600 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 1.6769 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 2.8528 4.0265 2.5717 31 1 6.0103 1.1496 -3.2812 32 1 8.4985 1.0346 -2.8277 33 1 8.9667 1.4083 1.7338 34 1 10.6205 1.2835 1.4648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338865983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:45 Heat of formation + Delta-G solvation = -53.307050 kcal Electronic energy + Delta-G solvation = -19886.028195 eV Core-core repulsion = 16717.136100 eV Total energy + Delta-G solvation = -3168.892095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14526 -38.84258 -36.47966 -35.13832 -33.50441 -33.15171 -31.62604 -29.25432 -26.33673 -25.56220 -24.04118 -21.44807 -21.04632 -19.94169 -18.85209 -18.39262 -16.92861 -16.29183 -16.10281 -15.18344 -14.76865 -14.62005 -14.52658 -14.24711 -13.97182 -13.83015 -13.05417 -12.71343 -12.48249 -12.05058 -11.80392 -11.75915 -11.51084 -11.42440 -11.18261 -11.08704 -10.61767 -10.53806 -10.25447 -9.92888 -9.84735 -9.61027 -9.26244 -8.85298 -8.16612 -7.93860 -7.60533 -6.76923 -4.64504 0.81737 2.18547 2.60110 2.67552 2.90084 2.96401 2.99807 3.58496 3.72951 3.74012 4.17752 4.47019 4.64068 5.27276 5.65160 5.68879 5.78470 5.90753 5.97319 6.03386 6.34209 6.42590 6.49744 6.51246 6.66569 6.73898 6.86301 6.90580 6.92645 6.97952 7.22844 7.45808 7.69021 7.95243 8.40973 8.61616 9.13657 9.59528 10.22218 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.007103 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.700781 B = 3941.243117 C = 5242.005438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.120 3.880 4 N -0.430 5.430 5 C -0.348 4.348 6 H 0.098 0.902 7 C 0.066 3.934 8 N -0.834 5.834 9 Si 0.905 3.095 10 H -0.256 1.256 11 H -0.270 1.270 12 H -0.272 1.272 13 C 0.537 3.463 14 O -0.586 6.586 15 C -0.174 4.174 16 C -0.121 4.121 17 C -0.065 4.065 18 C -0.345 4.345 19 C 0.601 3.399 20 N -0.855 5.855 21 O -0.551 6.551 22 S 0.275 5.725 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.280 0.720 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.400 0.600 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -3.017 3.946 5.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.003 4.003 4 N -0.147 5.147 5 C -0.483 4.483 6 H 0.115 0.885 7 C -0.147 4.147 8 N -0.466 5.466 9 Si 0.729 3.271 10 H -0.179 1.179 11 H -0.195 1.195 12 H -0.197 1.197 13 C 0.325 3.675 14 O -0.472 6.472 15 C -0.297 4.297 16 C -0.154 4.154 17 C -0.099 4.099 18 C -0.464 4.464 19 C 0.388 3.612 20 N -0.418 5.418 21 O -0.430 6.430 22 S 0.550 5.450 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.229 0.771 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.896 -2.755 4.492 6.013 hybrid contribution 0.612 0.002 -0.194 0.642 sum 3.508 -2.753 4.298 6.193 Atomic orbital electron populations 1.21656 0.96318 1.00637 1.01506 1.21856 0.94950 0.99072 1.01507 1.21451 0.80710 0.94728 1.03417 1.43181 1.05068 1.62541 1.03928 1.19338 1.18731 1.17030 0.93184 0.88523 1.25692 0.95094 0.93736 1.00149 1.69737 1.29996 1.10738 1.36171 0.86168 0.79994 0.79581 0.81367 1.17941 1.19496 1.19669 1.17519 0.84508 0.80644 0.84805 1.90671 1.68623 1.56180 1.31771 1.25012 0.98488 1.09436 0.96738 1.20325 0.91954 1.03872 0.99242 1.20239 0.95531 0.98965 0.95132 1.25964 1.00583 1.18145 1.01741 1.17249 0.87425 0.74587 0.81956 1.43702 1.12362 1.78020 1.07695 1.90777 1.44437 1.50631 1.57151 1.85153 0.89845 1.64071 1.05975 0.92904 0.93037 0.93473 0.92899 0.92063 0.88252 0.92183 0.90944 0.83768 0.84691 0.77095 0.76707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 37.16 0.37 -1.84 16 2 C -0.14 -2.54 6.26 -26.73 -0.17 -2.71 16 3 C 0.12 2.64 5.00 -4.04 -0.02 2.62 16 4 N -0.43 -10.08 2.42 -116.21 -0.28 -10.36 16 5 C -0.35 -7.78 6.76 -15.05 -0.10 -7.88 16 6 H 0.10 2.06 5.41 -32.47 -0.18 1.88 16 7 C 0.07 1.45 5.21 -17.44 -0.09 1.36 16 8 N -0.83 -19.60 11.55 55.51 0.64 -18.96 16 9 Si 0.91 16.51 29.56 -169.99 -5.03 11.48 16 10 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 11 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 12 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 13 C 0.54 12.96 7.61 -12.73 -0.10 12.86 16 14 O -0.59 -15.37 16.39 5.20 0.09 -15.28 16 15 C -0.17 -3.70 6.31 -36.58 -0.23 -3.93 16 16 C -0.12 -2.35 9.89 -40.66 -0.40 -2.75 16 17 C -0.07 -1.18 9.88 -40.69 -0.40 -1.58 16 18 C -0.34 -6.15 6.46 -36.56 -0.24 -6.39 16 19 C 0.60 10.19 8.07 -12.68 -0.10 10.08 16 20 N -0.85 -10.69 8.87 30.35 0.27 -10.42 16 21 O -0.55 -10.92 17.65 5.24 0.09 -10.83 16 22 S 0.27 5.02 17.61 -107.50 -1.89 3.12 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.10 2.27 5.99 -51.93 -0.31 1.96 16 29 H 0.06 1.39 7.37 -51.93 -0.38 1.01 16 30 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 31 H 0.14 2.66 8.05 -52.49 -0.42 2.23 16 32 H 0.14 2.25 8.04 -52.49 -0.42 1.83 16 33 H 0.40 4.44 7.93 -40.82 -0.32 4.11 16 34 H 0.40 4.03 8.93 -40.82 -0.36 3.67 16 LS Contribution 307.47 15.07 4.63 4.63 Total: -1.00 -28.45 307.47 -6.61 -35.06 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.65 Total: 11.69 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.48 Total: -0.14 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.63 Total: -39.74 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: 0.18 Total: -26.11 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.89 Total: 3.12 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.45 -6.61 -35.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338865983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.243 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds