Wall clock time and date at job start Tue Mar 31 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00308 * 2 1 4 4 C 1.50697 * 109.47063 * 180.02562 * 3 2 1 5 5 N 1.29375 * 124.70549 * 90.02930 * 4 3 2 6 6 C 1.30941 * 117.47206 * 179.68372 * 5 4 3 7 7 C 1.36782 * 113.91764 * 0.51953 * 6 5 4 8 8 C 1.46557 * 126.18148 * 179.78781 * 7 6 5 9 9 O 1.21728 * 119.99568 * 353.40465 * 8 7 6 10 10 N 1.34768 * 120.00364 * 173.40080 * 8 7 6 11 11 C 1.36894 * 120.00173 * 173.41334 * 10 8 7 12 12 H 1.08003 * 119.99798 * 227.28179 * 11 10 8 13 13 C 1.39000 * 120.00011 * 47.28317 * 11 10 8 14 14 N 1.31402 * 120.00212 * 18.37655 * 13 11 10 15 15 Si 1.86801 * 119.99966 * 198.38201 * 13 11 10 16 16 H 1.48505 * 109.46906 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.47010 * 299.99441 * 15 13 11 18 18 H 1.48501 * 109.47337 * 60.00047 * 15 13 11 19 19 C 1.46498 * 120.00031 * 353.41252 * 10 8 7 20 20 C 1.52999 * 117.50273 * 182.28032 * 19 10 8 21 21 C 1.53007 * 117.49989 * 113.62098 * 19 10 8 22 22 S 1.70921 * 124.70029 * 269.99855 * 4 3 2 23 23 H 1.09002 * 109.47343 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47196 * 299.99788 * 1 2 3 25 25 H 1.09003 * 109.46991 * 60.00124 * 1 2 3 26 26 H 1.09000 * 109.46699 * 60.00091 * 3 2 1 27 27 H 1.08999 * 109.47018 * 300.00065 * 3 2 1 28 28 H 1.07999 * 123.04228 * 180.33405 * 6 5 4 29 29 H 0.96998 * 120.00080 * 174.96680 * 14 13 11 30 30 H 1.08995 * 115.55225 * 327.95467 * 19 10 8 31 31 H 1.09007 * 117.49818 * 0.02562 * 20 19 10 32 32 H 1.08996 * 117.50610 * 145.02295 * 20 19 10 33 33 H 1.08994 * 117.49870 * 214.98201 * 21 19 10 34 34 H 1.08997 * 117.49496 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 7 4.2465 1.1289 -1.0645 6 6 5.5419 1.0325 -0.9002 7 6 5.9335 0.9951 0.4098 8 6 7.3110 0.8862 0.8984 9 8 8.2221 0.6988 0.1132 10 7 7.5689 0.9937 2.2168 11 6 8.8323 0.7586 2.6884 12 1 8.9777 0.1231 3.5495 13 6 9.9281 1.3378 2.0592 14 7 9.7593 2.3712 1.2653 15 14 11.6405 0.6472 2.3421 16 1 12.6276 1.4364 1.5623 17 1 11.9735 0.7262 3.7871 18 1 11.6816 -0.7703 1.9013 19 6 6.4972 1.3620 3.1452 20 6 6.8649 1.5198 4.6219 21 6 6.0496 0.3090 4.1611 22 16 4.4831 1.1092 1.4042 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 6.2381 0.9837 -1.7245 29 1 10.5297 2.8208 0.8841 30 1 5.7348 2.0287 2.7424 31 1 7.9044 1.3499 4.9027 32 1 6.3443 2.2901 5.1908 33 1 4.9928 0.2834 4.4268 34 1 6.5522 -0.6578 4.1383 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350069295.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:22 Heat of formation + Delta-G solvation = 16.421182 kcal Electronic energy + Delta-G solvation = -19892.296217 eV Core-core repulsion = 16726.427765 eV Total energy + Delta-G solvation = -3165.868452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.34204 -38.60024 -37.68332 -36.10280 -33.03516 -31.37580 -30.75234 -28.15424 -26.26648 -25.19176 -23.49868 -21.95986 -21.55794 -20.94475 -18.60266 -18.11616 -16.61297 -16.41230 -16.32929 -15.60853 -15.38725 -14.73059 -14.61835 -14.13492 -13.79254 -13.68292 -13.30237 -12.85296 -12.59585 -12.46204 -11.87036 -11.55477 -11.28509 -11.12061 -11.00624 -10.99403 -10.85724 -10.33000 -10.16240 -10.05834 -9.88934 -9.14499 -8.84357 -8.75292 -8.37790 -8.30868 -7.22036 -6.26988 -4.04457 0.78752 1.74407 2.17793 3.01134 3.23627 3.31165 3.34140 3.81536 4.09557 4.23599 4.53257 4.66216 4.72811 4.93752 5.10132 5.15672 5.19864 5.35230 5.39201 5.48510 5.51850 5.58597 5.61427 5.90060 5.96981 6.12415 6.30392 6.57455 6.67749 6.79514 6.95040 7.45292 8.07058 8.17163 8.82763 8.93282 9.41081 10.03890 10.79783 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.005214 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.382694 B = 5369.285902 C = 6047.798068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.147 3.853 4 C -0.028 4.028 5 N -0.457 5.457 6 C 0.066 3.934 7 C -0.225 4.225 8 C 0.539 3.461 9 O -0.516 6.516 10 N -0.407 5.407 11 C -0.345 4.345 12 H 0.085 0.915 13 C 0.074 3.926 14 N -0.818 5.818 15 Si 0.919 3.081 16 H -0.284 1.284 17 H -0.275 1.275 18 H -0.271 1.271 19 C 0.048 3.952 20 C -0.159 4.159 21 C -0.198 4.198 22 S 0.196 5.804 23 H 0.087 0.913 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.182 0.818 29 H 0.269 0.731 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.678 -0.315 3.577 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.068 3.932 4 C -0.301 4.301 5 N -0.172 5.172 6 C -0.090 4.090 7 C -0.351 4.351 8 C 0.326 3.674 9 O -0.395 6.395 10 N -0.126 5.126 11 C -0.472 4.472 12 H 0.103 0.897 13 C -0.139 4.139 14 N -0.450 5.450 15 Si 0.745 3.255 16 H -0.209 1.209 17 H -0.201 1.201 18 H -0.196 1.196 19 C -0.060 4.060 20 C -0.197 4.197 21 C -0.237 4.237 22 S 0.453 5.547 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.199 0.801 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.550 -0.430 3.522 14.977 hybrid contribution 1.119 0.079 -0.697 1.321 sum -13.432 -0.351 2.824 13.730 Atomic orbital electron populations 1.22763 0.80699 1.02969 1.00051 1.87990 1.19704 1.26987 1.95434 1.20676 0.85504 0.85411 1.01626 1.26944 1.00133 1.08393 0.94630 1.65987 1.05247 1.13919 1.32093 1.22209 0.90159 1.01000 0.95668 1.26920 0.99109 1.11919 0.97113 1.16484 0.84198 0.83183 0.83546 1.90696 1.43861 1.50978 1.53973 1.42618 1.07255 1.59379 1.03373 1.18921 0.80474 1.30589 1.17263 0.89714 1.25393 0.99883 0.93761 0.94896 1.69826 1.31773 1.16286 1.27098 0.86175 0.81724 0.79718 0.77897 1.20939 1.20086 1.19629 1.22013 0.94405 1.00849 0.88692 1.23084 1.02006 0.99268 0.95300 1.23380 0.99635 0.95461 1.05270 1.84134 0.96489 1.64832 1.09278 0.89429 0.93907 0.93888 0.91388 0.90841 0.80103 0.92035 0.87465 0.87022 0.89277 0.89113 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.20 10.69 -35.23 -0.38 -5.57 16 3 C 0.15 1.91 6.51 36.00 0.23 2.14 16 4 C -0.03 -0.47 7.00 -13.31 -0.09 -0.56 16 5 N -0.46 -8.85 10.50 -11.25 -0.12 -8.97 16 6 C 0.07 1.38 11.17 -18.46 -0.21 1.18 16 7 C -0.23 -4.95 6.31 -36.76 -0.23 -5.19 16 8 C 0.54 14.16 7.06 -12.91 -0.09 14.07 16 9 O -0.52 -15.46 14.59 5.16 0.08 -15.38 16 10 N -0.41 -10.16 2.80 -109.24 -0.31 -10.47 16 11 C -0.35 -9.14 7.84 -15.01 -0.12 -9.26 16 12 H 0.09 2.12 7.37 -52.48 -0.39 1.74 16 13 C 0.07 2.01 4.38 -17.45 -0.08 1.93 16 14 N -0.82 -23.74 11.82 55.50 0.66 -23.08 16 15 Si 0.92 21.18 29.60 -169.99 -5.03 16.15 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.05 0.96 4.50 -67.93 -0.31 0.65 16 20 C -0.16 -2.72 9.81 -26.69 -0.26 -2.98 16 21 C -0.20 -3.24 10.05 -26.69 -0.27 -3.51 16 22 S 0.20 3.34 18.12 -107.50 -1.95 1.40 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.18 3.70 8.06 -52.49 -0.42 3.28 16 29 H 0.27 7.45 8.32 -40.82 -0.34 7.11 16 30 H 0.11 2.01 5.07 -26.90 -0.14 1.88 16 31 H 0.11 2.08 6.77 -51.92 -0.35 1.73 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -33.23 305.78 -6.56 -39.79 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.81 Total: 1.65 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.31 Total: -0.13 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.23 Total: -42.52 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.30 Total: -20.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.95 Total: 1.40 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.23 -6.56 -39.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350069295.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.215 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds