Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46965 * 121.29064 * 3 2 1 5 5 C 1.36811 * 120.00468 * 83.27310 * 4 3 2 6 6 H 1.07999 * 120.00363 * 169.02501 * 5 4 3 7 7 C 1.39090 * 119.99786 * 349.02288 * 5 4 3 8 8 N 1.31341 * 119.99947 * 3.36806 * 7 5 4 9 9 Si 1.86803 * 120.00170 * 183.37213 * 7 5 4 10 10 H 1.48503 * 109.46810 * 59.99653 * 9 7 5 11 11 H 1.48500 * 109.47152 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47084 * 300.00058 * 9 7 5 13 13 C 1.34778 * 120.00103 * 263.27134 * 4 3 2 14 14 O 1.21593 * 120.00752 * 182.43697 * 13 4 3 15 15 C 1.47726 * 119.99795 * 2.43465 * 13 4 3 16 16 C 1.40684 * 119.76401 * 222.98132 * 15 13 4 17 17 C 1.35695 * 120.82669 * 180.02562 * 16 15 13 18 18 C 1.40735 * 120.09569 * 0.25283 * 17 16 15 19 19 N 1.33777 * 120.84949 * 180.31889 * 18 17 16 20 20 C 1.31348 * 119.77050 * 179.66856 * 19 18 17 21 21 C 1.39732 * 120.71442 * 359.73043 * 20 19 18 22 22 N 1.31295 * 120.67627 * 359.97438 * 21 20 19 23 23 C 1.33841 * 119.72997 * 359.97438 * 22 21 20 24 24 C 1.38519 * 119.76041 * 42.95688 * 15 13 4 25 25 H 1.09001 * 109.47907 * 1.28977 * 3 2 1 26 26 H 1.09000 * 109.47188 * 241.28289 * 3 2 1 27 27 H 0.96999 * 119.99719 * 179.97438 * 8 7 5 28 28 H 1.07995 * 119.58846 * 359.97438 * 16 15 13 29 29 H 1.07994 * 119.95485 * 179.97438 * 17 16 15 30 30 H 1.08000 * 119.63874 * 179.70874 * 20 19 18 31 31 H 1.08001 * 119.66025 * 179.97438 * 21 20 19 32 32 H 1.07997 * 120.25623 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.7183 -1.1803 5 6 3.1925 2.0828 -1.1599 6 1 3.7131 2.5993 -1.9528 7 6 2.6202 2.8050 -0.1181 8 7 2.0447 2.1740 0.8798 9 14 2.6699 4.6722 -0.1381 10 1 1.9703 5.1730 -1.3485 11 1 1.9958 5.1984 1.0760 12 1 4.0825 5.1296 -0.1581 13 6 3.4498 0.0342 -2.2864 14 8 3.8965 0.6257 -3.2503 15 6 3.2950 -1.4344 -2.3276 16 6 4.3174 -2.2292 -2.8773 17 6 4.1975 -3.5800 -2.9266 18 6 3.0383 -4.2042 -2.4295 19 7 2.9070 -5.5351 -2.4648 20 6 1.8187 -6.0959 -1.9890 21 6 0.7963 -5.3176 -1.4400 22 7 0.9037 -4.0101 -1.3885 23 6 2.0035 -3.4152 -1.8660 24 6 2.1444 -2.0188 -1.8244 25 1 2.9719 -1.0265 -0.0231 26 1 2.9711 0.4946 0.9013 27 1 1.6460 2.6777 1.6066 28 1 5.2084 -1.7585 -3.2656 29 1 4.9909 -4.1766 -3.3520 30 1 1.7129 -7.1702 -2.0228 31 1 -0.0915 -5.7966 -1.0540 32 1 1.3621 -1.4053 -1.4025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354873498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = 93.973642 kcal Electronic energy + Delta-G solvation = -21125.897271 eV Core-core repulsion = 17860.240546 eV Total energy + Delta-G solvation = -3265.656725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.31720 -39.34319 -36.80846 -36.00414 -34.71643 -34.41394 -32.15176 -30.74021 -30.39447 -27.60144 -25.98933 -24.88146 -23.96212 -22.22071 -20.59326 -18.46529 -18.11499 -17.84217 -16.82902 -16.36652 -16.20933 -15.07534 -14.98431 -14.63774 -14.46577 -14.12791 -13.94204 -13.49788 -13.07636 -12.93076 -12.23623 -12.02598 -11.73102 -11.68739 -11.65788 -11.59652 -11.42643 -11.31422 -11.22525 -10.58861 -10.54148 -10.46333 -9.45175 -9.11107 -8.96713 -8.77450 -8.38275 -8.33997 -6.58981 -4.17873 0.20910 0.55759 1.96293 2.65011 3.06573 3.13408 3.15642 3.55668 3.61535 3.91220 3.97861 4.03615 4.11659 4.18928 4.32966 4.57342 4.78460 4.86707 4.90866 5.15880 5.25876 5.29814 5.41433 5.49004 5.83135 5.95592 6.02542 6.16101 6.23425 6.47594 6.71916 6.75425 7.27342 7.28907 7.65065 7.75682 8.10224 8.68323 8.79434 8.97312 9.50517 10.34281 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.005353 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.130069 B = 5228.984551 C = 6044.478592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.251 3.749 3 C 0.204 3.796 4 N -0.425 5.425 5 C -0.296 4.296 6 H 0.116 0.884 7 C 0.030 3.970 8 N -0.885 5.885 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.477 3.523 14 O -0.569 6.569 15 C -0.073 4.073 16 C -0.053 4.053 17 C -0.094 4.094 18 C 0.081 3.919 19 N -0.428 5.428 20 C 0.069 3.931 21 C 0.068 3.932 22 N -0.417 5.417 23 C 0.080 3.920 24 C -0.075 4.075 25 H 0.077 0.923 26 H 0.157 0.843 27 H 0.278 0.722 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -12.698 -0.415 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.066 4.066 3 C 0.078 3.922 4 N -0.143 5.143 5 C -0.423 4.423 6 H 0.134 0.866 7 C -0.173 4.173 8 N -0.525 5.525 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.194 1.194 13 C 0.267 3.733 14 O -0.453 6.453 15 C -0.079 4.079 16 C -0.073 4.073 17 C -0.114 4.114 18 C -0.043 4.043 19 N -0.142 5.142 20 C -0.106 4.106 21 C -0.108 4.108 22 N -0.131 5.131 23 C -0.044 4.044 24 C -0.096 4.096 25 H 0.095 0.905 26 H 0.174 0.826 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.189 0.811 31 H 0.189 0.811 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.298 -12.066 -0.726 12.157 hybrid contribution 0.089 0.744 0.260 0.793 sum 1.387 -11.321 -0.466 11.416 Atomic orbital electron populations 1.80961 1.13374 1.11987 1.09083 1.29078 0.95303 0.90142 0.92068 1.19488 0.81836 0.96534 0.94375 1.43612 1.53832 1.06953 1.09895 1.19931 1.33179 0.79721 1.09501 0.86626 1.25430 0.95084 1.01840 0.94918 1.69676 1.36423 1.36277 1.10145 0.85698 0.78900 0.80487 0.78027 1.19618 1.20642 1.19380 1.17755 0.86189 0.85383 0.84013 1.90666 1.50372 1.69275 1.34958 1.20382 0.94364 0.95504 0.97647 1.21024 0.98516 0.92567 0.95242 1.20631 0.96210 0.94282 1.00264 1.19609 0.95805 0.89935 0.98936 1.68658 1.22362 1.10148 1.13022 1.24000 0.90057 1.01906 0.94682 1.24022 0.99871 0.90251 0.96653 1.68735 1.21092 1.11240 1.12069 1.19428 0.91432 0.95003 0.98515 1.21724 0.98082 0.92041 0.97718 0.90498 0.82581 0.91063 0.83787 0.84054 0.81141 0.81109 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.40 18.48 42.15 0.78 -10.62 16 2 C 0.25 5.68 10.50 -20.76 -0.22 5.46 16 3 C 0.20 4.23 4.75 -6.83 -0.03 4.19 16 4 N -0.43 -9.87 2.60 -119.06 -0.31 -10.18 16 5 C -0.30 -7.38 9.48 -15.01 -0.14 -7.53 16 6 H 0.12 2.98 7.20 -52.49 -0.38 2.61 16 7 C 0.03 0.70 5.38 -17.45 -0.09 0.61 16 8 N -0.88 -21.06 8.07 55.50 0.45 -20.61 16 9 Si 0.94 19.36 29.56 -169.99 -5.02 14.34 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 13 C 0.48 10.82 7.22 -12.38 -0.09 10.73 16 14 O -0.57 -14.52 16.55 5.28 0.09 -14.43 16 15 C -0.07 -1.38 4.97 -104.99 -0.52 -1.90 16 16 C -0.05 -0.82 9.55 -39.57 -0.38 -1.20 16 17 C -0.09 -1.33 9.95 -39.55 -0.39 -1.72 16 18 C 0.08 1.26 6.59 -84.71 -0.56 0.70 16 19 N -0.43 -5.89 10.46 -10.73 -0.11 -6.00 16 20 C 0.07 0.74 11.21 -17.20 -0.19 0.54 16 21 C 0.07 0.79 11.21 -17.22 -0.19 0.59 16 22 N -0.42 -6.75 10.46 -10.81 -0.11 -6.86 16 23 C 0.08 1.37 6.58 -84.81 -0.56 0.81 16 24 C -0.07 -1.40 7.54 -38.66 -0.29 -1.69 16 25 H 0.08 1.37 5.66 -51.93 -0.29 1.08 16 26 H 0.16 3.30 5.99 -51.93 -0.31 2.99 16 27 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 29 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.15 3.03 4.18 -52.49 -0.22 2.81 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -30.57 286.00 -5.63 -36.19 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -2.03 Total: 4.25 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -3.66 Total: 9.62 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.69 Total: -54.28 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.43 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.57 -5.63 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354873498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.168 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds