Wall clock time and date at job start Tue Mar 31 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31633 * 119.99688 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00457 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47357 * 89.99660 * 13 11 9 15 15 H 1.48495 * 109.47496 * 209.99879 * 13 11 9 16 16 H 1.48500 * 109.46916 * 330.00121 * 13 11 9 17 17 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 18 18 C 1.38833 * 120.75686 * 280.00229 * 17 2 1 19 19 C 1.38047 * 119.28661 * 179.97438 * 18 17 2 20 20 N 1.31958 * 120.84096 * 0.02562 * 19 18 17 21 21 C 1.32251 * 121.64358 * 359.97438 * 20 19 18 22 22 O 1.35681 * 119.68123 * 180.02562 * 21 20 19 23 23 C 1.38383 * 120.75892 * 99.71672 * 17 2 1 24 24 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 28 28 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 29 29 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 30 30 H 0.97002 * 120.00245 * 179.97438 * 12 11 9 31 31 H 1.07991 * 120.35185 * 359.97438 * 18 17 2 32 32 H 1.08002 * 119.57628 * 179.97438 * 19 18 17 33 33 H 0.96693 * 114.00110 * 90.00350 * 22 21 20 34 34 H 1.07998 * 120.44149 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3121 -0.6309 6.2408 10 1 3.5201 -1.6677 6.0212 11 6 3.5178 -0.1380 7.5220 12 7 3.9678 -0.9340 8.4689 13 14 3.1561 1.6546 7.9024 14 1 1.7450 1.7920 8.3442 15 1 4.0608 2.1239 8.9824 16 1 3.3748 2.4733 6.6829 17 6 2.0324 -0.7104 -1.2304 18 6 2.0737 -2.0971 -1.2824 19 6 2.5391 -2.7165 -2.4250 20 7 2.9431 -2.0075 -3.4620 21 6 2.9189 -0.6853 -3.4504 22 8 3.3434 0.0040 -4.5393 23 6 2.4575 0.0045 -2.3363 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6316 1.1527 28 1 1.9759 -1.5504 3.8327 29 1 3.6480 -1.1212 3.3986 30 1 4.1119 -0.5895 9.3642 31 1 1.7453 -2.6849 -0.4381 32 1 2.5736 -3.7950 -2.4704 33 1 2.6462 0.1918 -5.1823 34 1 2.4350 1.0842 -2.3317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355206600.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:32 Heat of formation + Delta-G solvation = -44.476961 kcal Electronic energy + Delta-G solvation = -18759.349010 eV Core-core repulsion = 15590.839817 eV Total energy + Delta-G solvation = -3168.509193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.01436 -39.47651 -37.59322 -35.87089 -32.75534 -32.46284 -30.65633 -30.58966 -28.65183 -25.65117 -24.78429 -23.94011 -21.86780 -20.44565 -18.91694 -17.93281 -17.38530 -16.91900 -16.16940 -16.05656 -15.61091 -15.20000 -14.97936 -14.66544 -14.04446 -13.93430 -13.63975 -13.45316 -13.08290 -12.82335 -12.57034 -12.23713 -12.18217 -12.06258 -11.47933 -11.29615 -11.03317 -10.65918 -10.12980 -9.88985 -9.85328 -9.61344 -9.34324 -9.16178 -9.02528 -8.54318 -6.95553 -6.31582 -4.03826 0.59864 0.74265 2.68479 2.86287 3.08382 3.19908 3.30911 3.43913 3.48133 3.60705 4.04111 4.30390 4.32297 4.60242 4.64598 4.70393 4.83244 4.97749 5.07543 5.13581 5.21564 5.27655 5.36461 5.52728 5.58816 5.70412 5.85622 5.95127 5.97519 6.10036 6.40297 7.08561 7.46105 7.52274 7.91440 8.36812 8.39020 9.14441 10.77669 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.036267 B = 0.003162 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.858081 B = 8853.552150 C = 9085.463194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.103 0.897 4 N -0.732 5.732 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.125 4.125 8 S -0.140 6.140 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.096 3.904 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.027 4.027 18 C -0.178 4.178 19 C 0.129 3.871 20 N -0.506 5.506 21 C 0.313 3.687 22 O -0.482 6.482 23 C -0.175 4.175 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.399 0.601 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.271 0.729 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.401 0.599 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 -2.087 -23.318 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 H 0.121 0.879 4 N -0.388 5.388 5 C 0.320 3.680 6 O -0.390 6.390 7 C -0.275 4.275 8 S 0.086 5.914 9 C -0.670 4.670 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.517 5.517 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.159 1.159 17 C -0.035 4.035 18 C -0.198 4.198 19 C -0.028 4.028 20 N -0.225 5.225 21 C 0.135 3.865 22 O -0.289 6.289 23 C -0.196 4.196 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.235 0.765 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.258 0.742 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.076 -0.519 -23.524 24.302 hybrid contribution -0.281 -0.807 0.782 1.159 sum -6.357 -1.326 -22.742 23.651 Atomic orbital electron populations 1.22174 0.93547 1.02712 1.03240 1.19761 0.94608 0.97011 0.80920 0.87949 1.46102 1.69507 1.14087 1.09094 1.20313 0.76715 0.87225 0.83708 1.90703 1.48265 1.15643 1.84391 1.23287 1.04569 1.03541 0.96138 1.84791 1.87214 1.16394 1.03003 1.22310 1.50750 0.98663 0.95250 0.89361 1.24718 0.93338 0.98310 0.94948 1.69938 1.43364 1.35812 1.02539 0.86731 0.79328 0.85187 0.80584 1.19192 1.19914 1.15920 1.20339 0.94364 0.93868 0.94946 1.22004 1.02863 0.94596 1.00321 1.22525 0.92676 1.00088 0.87494 1.67182 1.16295 1.07942 1.31061 1.19130 0.92633 0.86849 0.87917 1.84799 1.38873 1.72993 1.32222 1.21987 1.01366 1.02096 0.94196 0.91550 0.92062 0.90754 0.76536 0.88363 0.88370 0.91902 0.84168 0.81925 0.74161 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.47 37.16 0.35 -1.11 16 2 C 0.18 1.88 2.81 -69.09 -0.19 1.68 16 3 H 0.10 1.21 7.48 -51.93 -0.39 0.83 16 4 N -0.73 -8.59 5.04 -54.94 -0.28 -8.87 16 5 C 0.53 8.92 7.81 -10.98 -0.09 8.83 16 6 O -0.52 -10.49 15.52 5.56 0.09 -10.40 16 7 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 8 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 9 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 10 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 11 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 12 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 13 Si 0.86 21.56 27.74 -169.99 -4.72 16.85 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 17 C -0.03 -0.24 4.98 -104.35 -0.52 -0.76 16 18 C -0.18 -1.36 9.15 -39.43 -0.36 -1.72 16 19 C 0.13 1.04 11.17 -17.57 -0.20 0.85 16 20 N -0.51 -5.30 10.39 -13.33 -0.14 -5.44 16 21 C 0.31 3.09 7.74 -17.12 -0.13 2.96 16 22 O -0.48 -4.13 13.56 -18.75 -0.25 -4.39 16 23 C -0.17 -1.57 9.71 -39.28 -0.38 -1.95 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.40 3.63 6.95 -40.82 -0.28 3.34 16 28 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 31 H 0.14 0.77 7.01 -52.49 -0.37 0.40 16 32 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.40 1.30 9.06 45.56 0.41 1.71 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -35.83 313.91 -6.03 -41.86 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.16 Total: 1.91 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.08 Total: -5.17 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.36 Total: -39.91 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.17 Total: -14.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.85 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.83 -6.03 -41.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355206600.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.619 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds