Wall clock time and date at job start Tue Mar 31 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47035 * 59.99524 * 13 11 9 15 15 H 1.48499 * 109.47381 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46580 * 299.99884 * 13 11 9 17 17 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 18 18 C 1.38826 * 120.75521 * 79.72967 * 17 2 1 19 19 C 1.38049 * 119.29259 * 179.74456 * 18 17 2 20 20 N 1.31966 * 120.82724 * 0.53469 * 19 18 17 21 21 C 1.32248 * 121.65280 * 359.71610 * 20 19 18 22 22 O 1.35673 * 119.68811 * 180.02562 * 21 20 19 23 23 C 1.38382 * 120.76026 * 259.99913 * 17 2 1 24 24 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 27 27 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 28 28 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 29 29 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 30 30 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 31 31 H 1.08002 * 120.35511 * 359.97438 * 18 17 2 32 32 H 1.07997 * 119.58788 * 180.25157 * 19 18 17 33 33 H 0.96707 * 113.99949 * 270.02321 * 22 21 20 34 34 H 1.08000 * 120.44195 * 0.02712 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 16 2.6982 0.4311 -4.9762 9 6 3.2960 -0.6356 -6.2449 10 1 3.5060 -1.6719 -6.0247 11 6 3.4959 -0.1444 -7.5276 12 7 3.2385 1.1182 -7.7964 13 14 4.1289 -1.2754 -8.8728 14 1 3.1771 -2.3991 -9.0632 15 1 4.2562 -0.5134 -10.1410 16 1 5.4574 -1.8126 -8.4832 17 6 2.0322 -0.7103 1.2305 18 6 2.0683 -2.0970 1.2848 19 6 2.5391 -2.7163 2.4252 20 7 2.9431 -2.0071 3.4622 21 6 2.9192 -0.6849 3.4504 22 8 3.3445 0.0046 4.5388 23 6 2.4628 0.0048 2.3343 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.2491 -1.6318 -1.1525 28 1 3.6436 -1.1225 -3.4039 29 1 1.9697 -1.5525 -3.8299 30 1 3.3785 1.4616 -8.6927 31 1 1.7351 -2.6850 0.4424 32 1 2.5731 -3.7948 2.4710 33 1 2.6476 0.1922 5.1825 34 1 2.4440 1.0846 2.3281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355206601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:35 Heat of formation + Delta-G solvation = -44.784445 kcal Electronic energy + Delta-G solvation = -18713.376675 eV Core-core repulsion = 15544.854148 eV Total energy + Delta-G solvation = -3168.522527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97275 -39.36608 -37.55008 -35.79250 -32.67336 -32.44921 -30.60665 -30.51697 -28.52399 -25.52247 -24.71896 -23.90475 -21.79671 -20.34107 -18.86483 -17.89640 -17.34080 -16.86315 -16.07624 -16.02121 -15.54894 -15.07287 -14.82414 -14.62512 -14.04864 -13.95649 -13.57440 -13.31920 -13.01601 -12.65652 -12.50975 -12.15132 -12.11573 -11.95211 -11.41106 -11.07191 -11.05504 -10.79437 -10.09016 -9.86699 -9.81425 -9.48816 -9.30557 -9.10133 -9.04049 -8.27941 -6.53223 -6.23908 -3.95003 0.63115 0.78036 2.93310 2.99397 3.11483 3.22064 3.25117 3.28045 3.44416 3.65712 4.09389 4.18218 4.35639 4.64554 4.70633 4.85983 5.01488 5.11253 5.13368 5.18757 5.31152 5.38199 5.54111 5.60709 5.65672 5.83322 5.92479 6.02707 6.09004 6.14112 6.49784 7.11404 7.55021 7.56105 7.57944 8.32585 8.50231 9.21332 10.83451 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.003047 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.000317 B = 9186.011125 C = 9497.201484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.102 0.898 4 N -0.734 5.734 5 C 0.535 3.465 6 O -0.514 6.514 7 C -0.154 4.154 8 S -0.058 6.058 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.026 4.026 18 C -0.178 4.178 19 C 0.128 3.872 20 N -0.506 5.506 21 C 0.313 3.687 22 O -0.482 6.482 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.398 0.602 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.269 0.731 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.401 0.599 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 -6.789 21.211 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.076 3.924 3 H 0.120 0.880 4 N -0.390 5.390 5 C 0.322 3.678 6 O -0.388 6.388 7 C -0.305 4.305 8 S 0.168 5.832 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.034 4.034 18 C -0.198 4.198 19 C -0.029 4.029 20 N -0.226 5.226 21 C 0.134 3.866 22 O -0.289 6.289 23 C -0.196 4.196 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.233 0.767 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.180 0.820 33 H 0.258 0.742 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.417 -5.040 21.467 22.489 hybrid contribution 0.197 -2.116 -1.189 2.435 sum -4.221 -7.155 20.278 21.914 Atomic orbital electron populations 1.22174 0.93611 1.02630 1.03245 1.19756 0.94577 0.97046 0.80975 0.87959 1.46144 1.69708 1.13986 1.09160 1.20344 0.76634 0.87241 0.83625 1.90707 1.48005 1.15685 1.84367 1.23539 1.03777 1.04930 0.98211 1.85395 1.86504 1.12834 0.98450 1.22825 1.51334 0.98143 0.96222 0.90949 1.24992 0.95037 0.95558 0.97958 1.70006 1.45400 1.13290 1.21592 0.86219 0.79319 0.80008 0.79934 1.19924 1.20794 1.19922 1.20360 0.94220 0.93859 0.94991 1.22001 1.02863 0.94625 1.00306 1.22514 0.92763 1.00044 0.87538 1.67174 1.16371 1.07953 1.31053 1.19125 0.92696 0.86843 0.87907 1.84800 1.38867 1.72989 1.32228 1.21992 1.01326 1.02124 0.94170 0.90699 0.92147 0.91609 0.76713 0.89148 0.89096 0.92092 0.84203 0.81979 0.74176 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.47 37.16 0.35 -1.21 16 2 C 0.18 1.99 2.81 -69.08 -0.19 1.80 16 3 H 0.10 1.29 7.48 -51.93 -0.39 0.90 16 4 N -0.73 -9.17 5.04 -54.93 -0.28 -9.45 16 5 C 0.54 9.48 7.81 -10.98 -0.09 9.40 16 6 O -0.51 -11.09 15.53 5.55 0.09 -11.01 16 7 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 8 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 9 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 13 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C -0.03 -0.24 4.97 -104.35 -0.52 -0.76 16 18 C -0.18 -1.42 9.14 -39.43 -0.36 -1.78 16 19 C 0.13 1.07 11.18 -17.56 -0.20 0.88 16 20 N -0.51 -5.44 10.39 -13.33 -0.14 -5.58 16 21 C 0.31 3.18 7.74 -17.12 -0.13 3.05 16 22 O -0.48 -4.26 13.56 -18.72 -0.25 -4.52 16 23 C -0.17 -1.64 9.71 -39.28 -0.38 -2.02 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.40 3.87 6.97 -40.82 -0.28 3.58 16 28 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.14 0.82 7.03 -52.49 -0.37 0.45 16 32 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.40 1.40 9.06 45.56 0.41 1.82 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -36.10 316.63 -6.54 -42.65 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.13 Total: 2.20 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.10 Total: -6.26 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.32 Total: -40.25 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.17 Total: -15.52 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.10 -6.54 -42.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355206601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.138 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds