Wall clock time and date at job start Tue Mar 31 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21613 * 120.00190 * 0.02562 * 14 13 3 16 16 C 1.47250 * 119.99909 * 180.02562 * 14 13 3 17 17 C 1.37345 * 126.15282 * 180.02562 * 16 14 13 18 18 N 1.30191 * 114.01245 * 179.97438 * 17 16 14 19 19 C 1.30480 * 117.39682 * 359.97438 * 18 17 16 20 20 C 1.46953 * 124.74248 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99842 * 359.96891 * 20 19 18 22 22 O 1.21272 * 119.99836 * 179.97438 * 20 19 18 23 23 S 1.70931 * 110.51423 * 359.72563 * 19 18 17 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 31 31 H 1.08001 * 122.99376 * 359.96870 * 17 16 14 32 32 H 1.08997 * 109.47340 * 60.00886 * 21 20 19 33 33 H 1.09006 * 109.46990 * 179.97438 * 21 20 19 34 34 H 1.08995 * 109.47725 * 300.00072 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3417 2.6318 0.4319 16 6 0.0459 3.3232 2.6250 17 6 -1.1558 3.9374 2.8798 18 7 -1.2487 4.4443 4.0754 19 6 -0.2189 4.3113 4.8656 20 6 -0.1492 4.8188 6.2430 21 6 -1.3236 5.5540 6.8354 22 8 0.8536 4.6459 6.9028 23 16 1.0344 3.4570 4.0776 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 -1.9527 3.9950 2.1531 32 1 -2.1965 4.9013 6.8393 33 1 -1.0882 5.8512 7.8574 34 1 -1.5358 6.4410 6.2385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412253374.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:07 Heat of formation + Delta-G solvation = -32.998586 kcal Electronic energy + Delta-G solvation = -19317.043828 eV Core-core repulsion = 16149.032375 eV Total energy + Delta-G solvation = -3168.011454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30089 -39.44322 -38.61892 -35.22793 -32.61062 -31.75355 -31.04203 -29.53941 -27.36982 -26.43031 -23.38642 -22.35365 -21.45440 -19.68516 -19.30706 -18.46452 -17.18641 -16.33066 -15.83731 -15.75251 -15.28956 -15.16348 -14.83417 -14.54626 -14.05158 -13.87123 -13.34903 -12.78394 -12.65295 -12.48249 -12.21351 -11.69592 -11.64843 -11.35091 -11.04211 -10.92888 -10.79944 -10.40955 -10.31239 -9.98367 -9.77373 -9.63734 -9.43592 -9.22118 -9.15722 -8.60522 -8.05286 -6.21118 -4.31260 -0.33928 0.92034 1.41922 1.57346 2.65254 3.19265 3.27518 3.29863 3.40499 3.53300 3.77446 4.28988 4.33684 4.72973 5.03784 5.10761 5.15384 5.17549 5.28409 5.63271 5.93013 6.29935 6.35470 6.54562 6.84407 6.92898 7.06300 7.15722 7.26437 7.34854 7.49164 7.59821 7.76857 8.05767 8.40064 8.60689 8.83740 9.35992 10.84281 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.004251 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.412654 B = 6585.594099 C = 7371.779408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.695 5.695 14 C 0.575 3.425 15 O -0.523 6.523 16 C -0.255 4.255 17 C 0.094 3.906 18 N -0.425 5.425 19 C -0.078 4.078 20 C 0.438 3.562 21 C -0.177 4.177 22 O -0.445 6.445 23 S 0.273 5.727 24 H 0.051 0.949 25 H 0.036 0.964 26 H 0.025 0.975 27 H 0.033 0.967 28 H 0.103 0.897 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.196 0.804 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 6.657 13.816 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.343 5.343 14 C 0.357 3.643 15 O -0.402 6.402 16 C -0.381 4.381 17 C -0.067 4.067 18 N -0.144 5.144 19 C -0.348 4.348 20 C 0.312 3.688 21 C -0.236 4.236 22 O -0.317 6.317 23 S 0.530 5.470 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.213 0.787 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.481 6.376 13.887 16.599 hybrid contribution 0.453 0.006 -0.548 0.711 sum -6.028 6.382 13.340 15.969 Atomic orbital electron populations 1.21859 0.98266 0.98358 1.01175 1.21958 0.92684 0.99490 1.02626 1.18940 0.94644 0.89330 0.80201 0.92769 1.21230 0.90386 1.39458 1.06562 0.91907 1.24876 0.98791 0.94595 0.95258 1.69895 1.35180 1.37382 1.09293 0.86377 0.84576 0.77875 0.78218 1.19664 1.20770 1.20795 1.46554 1.13600 1.55094 1.19036 1.16817 0.83515 0.79371 0.84625 1.90815 1.51387 1.59751 1.38245 1.27473 1.00056 1.09780 1.00778 1.22489 0.96735 0.94884 0.92622 1.66198 1.26528 1.18192 1.03499 1.27583 0.96050 1.08669 1.02463 1.21721 0.88814 0.75665 0.82644 1.22050 0.97254 1.02076 1.02238 1.90627 1.32591 1.48313 1.60131 1.84115 1.16144 1.44373 1.02370 0.92961 0.94471 0.95548 0.94828 0.87929 0.92466 0.78055 0.78735 0.88159 0.89383 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.01 5.45 -26.74 -0.15 -3.16 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.87 11.30 55.43 0.63 -23.25 16 9 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.70 -13.96 5.02 -56.07 -0.28 -14.24 16 14 C 0.57 11.00 6.38 -12.60 -0.08 10.92 16 15 O -0.52 -11.47 14.01 5.27 0.07 -11.40 16 16 C -0.25 -3.89 6.56 -36.25 -0.24 -4.13 16 17 C 0.09 1.29 11.18 -18.57 -0.21 1.08 16 18 N -0.43 -5.41 10.24 -12.21 -0.12 -5.54 16 19 C -0.08 -0.97 7.16 -14.60 -0.10 -1.07 16 20 C 0.44 4.76 7.25 -30.78 -0.22 4.54 16 21 C -0.18 -1.26 10.03 36.01 0.36 -0.89 16 22 O -0.44 -5.87 17.58 5.56 0.10 -5.77 16 23 S 0.27 3.52 22.05 -107.50 -2.37 1.15 16 24 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 25 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.39 6.88 7.74 -40.82 -0.32 6.57 16 31 H 0.20 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 309.37 15.07 4.66 4.66 Total: -1.00 -29.18 309.37 -7.00 -36.18 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.80 Total: 4.50 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.87 Total: -1.37 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.22 Total: -43.02 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.17 Total: -17.17 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.37 Total: 1.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.18 -7.00 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412253374.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.184 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds