Wall clock time and date at job start Tue Mar 31 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 119.99558 * 2 1 4 4 H 1.48504 * 109.47347 * 239.99450 * 3 2 1 5 5 H 1.48500 * 109.47567 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46899 * 120.00118 * 3 2 1 7 7 C 1.37873 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99510 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00445 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.81404 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46918 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.46947 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47238 * 179.97438 * 13 12 11 15 15 O 1.21279 * 119.99507 * 0.02562 * 14 13 12 16 16 C 1.47011 * 120.00202 * 179.97438 * 14 13 12 17 17 C 1.39945 * 120.14559 * 359.73171 * 16 14 13 18 18 C 1.37739 * 119.85306 * 179.73940 * 17 16 14 19 19 C 1.38721 * 120.14563 * 0.53643 * 18 17 16 20 20 F 1.35095 * 119.85396 * 179.69986 * 19 18 17 21 21 C 1.38718 * 120.29097 * 359.71004 * 19 18 17 22 22 C 1.37742 * 120.14864 * 0.03517 * 21 19 18 23 23 H 0.96992 * 120.00254 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47480 * 59.99221 * 9 7 2 25 25 H 1.09003 * 109.46500 * 299.99306 * 9 7 2 26 26 H 1.08992 * 109.46888 * 59.99811 * 11 10 9 27 27 H 1.08996 * 109.46839 * 299.99943 * 11 10 9 28 28 H 1.09001 * 109.47372 * 60.00152 * 12 11 10 29 29 H 1.09004 * 109.47108 * 299.99897 * 12 11 10 30 30 H 1.09001 * 109.46832 * 59.99979 * 13 12 11 31 31 H 1.09000 * 109.47611 * 300.00276 * 13 12 11 32 32 H 1.08003 * 120.06841 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.92728 * 180.24971 * 18 17 16 34 34 H 1.08007 * 119.92519 * 179.97438 * 21 19 18 35 35 H 1.08000 * 120.07524 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3517 -5.3367 0.0013 12 6 2.2086 -6.6042 0.0020 13 6 1.2992 -7.8346 0.0034 14 6 2.1432 -9.0831 0.0034 15 8 3.3529 -8.9972 0.0030 16 6 1.5001 -10.4051 0.0052 17 6 0.1045 -10.5077 0.0124 18 6 -0.4918 -11.7494 0.0086 19 6 0.2881 -12.8967 0.0088 20 9 -0.3029 -14.1115 0.0112 21 6 1.6720 -12.8020 0.0068 22 6 2.2809 -11.5664 0.0053 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6243 -2.5567 0.8904 26 1 0.7223 -5.3237 -0.8884 27 1 0.7229 -5.3232 0.8915 28 1 2.8378 -6.6170 0.8921 29 1 2.8378 -6.6179 -0.8880 30 1 0.6697 -7.8220 -0.8864 31 1 0.6703 -7.8207 0.8935 32 1 -0.5037 -9.6153 0.0172 33 1 -1.5688 -11.8300 0.0101 34 1 2.2735 -13.6991 0.0074 35 1 3.3585 -11.4941 0.0042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013135.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:50 Heat of formation + Delta-G solvation = -81.198670 kcal Electronic energy + Delta-G solvation = -17815.785870 eV Core-core repulsion = 14625.764342 eV Total energy + Delta-G solvation = -3190.021528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.44031 -40.36545 -38.41867 -34.47711 -33.13206 -31.84877 -31.40899 -28.55358 -28.07039 -24.30982 -23.51726 -23.05737 -21.56186 -19.99244 -18.27986 -17.04931 -16.81701 -16.42488 -16.15510 -15.87746 -15.49010 -15.04694 -14.83112 -14.29722 -14.27894 -14.14672 -13.56386 -13.35746 -12.94918 -12.78779 -12.46232 -12.43390 -11.91859 -11.84288 -11.64674 -11.41243 -10.87589 -10.69556 -10.68511 -10.09276 -9.80108 -9.69778 -9.49713 -9.24328 -8.82803 -8.59941 -6.66641 -6.18442 -4.22309 0.09403 0.71299 1.98904 2.65106 3.18940 3.29269 3.32006 3.36834 3.63543 3.71091 3.91064 4.15734 4.33130 4.36688 4.66884 4.68588 4.82648 4.96482 5.01194 5.18618 5.32695 5.36501 5.47449 5.48511 5.54834 5.60603 5.67045 5.85770 5.90692 6.19044 6.27276 6.39285 7.10826 7.11949 7.27040 7.76432 8.03020 8.79435 9.40569 10.92935 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.054244 B = 0.002249 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.060674 B =12447.311499 C =12932.320426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.092 3.908 10 S -0.311 6.311 11 C -0.089 4.089 12 C -0.091 4.091 13 C -0.163 4.163 14 C 0.397 3.603 15 O -0.444 6.444 16 C -0.178 4.178 17 C -0.043 4.043 18 C -0.167 4.167 19 C 0.126 3.874 20 F -0.135 7.135 21 C -0.167 4.167 22 C -0.034 4.034 23 H 0.266 0.734 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 -25.603 0.021 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.054 4.054 10 S -0.085 6.085 11 C -0.238 4.238 12 C -0.129 4.129 13 C -0.202 4.202 14 C 0.274 3.726 15 O -0.318 6.318 16 C -0.179 4.179 17 C -0.061 4.061 18 C -0.185 4.185 19 C 0.107 3.893 20 F -0.114 7.114 21 C -0.186 4.186 22 C -0.052 4.052 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.736 -25.435 0.022 25.446 hybrid contribution -1.318 0.537 0.000 1.423 sum -2.054 -24.898 0.022 24.983 Atomic orbital electron populations 1.69944 1.06135 1.27411 1.49785 1.24971 0.94989 0.99295 0.94689 0.86402 0.79389 0.81822 0.78986 1.19895 1.21085 1.19899 1.20667 0.93473 0.88815 1.52160 0.91514 1.21017 0.93608 0.90895 0.99929 1.86699 1.21396 1.02311 1.98050 1.23194 1.00462 0.96183 1.03943 1.21119 0.97141 0.90291 1.04359 1.22100 0.99962 0.93291 1.04861 1.22466 0.89344 0.89475 0.71349 1.90559 1.16512 1.89325 1.35434 1.20718 0.94403 0.95501 1.07303 1.21399 0.93549 0.97713 0.93421 1.21164 1.01116 0.91270 1.04977 1.18074 0.91332 0.80360 0.99565 1.91530 1.84337 1.42116 1.93370 1.21157 0.92805 0.99491 1.05138 1.21331 1.01111 0.90358 0.92404 0.92483 0.94716 0.94708 0.90949 0.90955 0.90595 0.90589 0.88010 0.88003 0.83629 0.83928 0.84061 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.60 9.13 -34.44 -0.31 -14.92 16 8 H 0.07 1.91 7.71 -52.48 -0.40 1.50 16 9 C 0.09 2.42 5.70 36.01 0.21 2.62 16 10 S -0.31 -6.87 21.66 -107.50 -2.33 -9.20 16 11 C -0.09 -1.44 5.94 37.16 0.22 -1.22 16 12 C -0.09 -1.23 4.51 -26.73 -0.12 -1.35 16 13 C -0.16 -1.53 4.31 -27.88 -0.12 -1.65 16 14 C 0.40 4.14 7.11 -30.75 -0.22 3.93 16 15 O -0.44 -6.15 15.97 5.56 0.09 -6.06 16 16 C -0.18 -1.52 5.87 -105.07 -0.62 -2.14 16 17 C -0.04 -0.28 9.47 -39.13 -0.37 -0.65 16 18 C -0.17 -1.08 10.01 -39.59 -0.40 -1.48 16 19 C 0.13 0.96 7.31 -39.23 -0.29 0.67 16 20 F -0.14 -1.12 17.26 2.25 0.04 -1.09 16 21 C -0.17 -1.20 10.01 -39.59 -0.40 -1.59 16 22 C -0.03 -0.28 9.59 -39.13 -0.38 -0.65 16 23 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 29 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.15 0.62 7.05 -52.48 -0.37 0.25 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.14 1.13 7.65 -52.49 -0.40 0.72 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -31.78 325.21 -9.00 -40.78 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -4.53 Total: -3.77 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.89 Total: -16.71 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.34 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: 0.09 Total: -6.06 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -6.87 SS G_CDS: -2.33 Total: -9.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.78 -9.00 -40.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013135.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.421 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds