Wall clock time and date at job start Tue Mar 31 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99792 * 2 1 4 4 H 1.48502 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47461 * 300.00186 * 3 2 1 6 6 H 1.48505 * 109.46993 * 60.00125 * 3 2 1 7 7 C 1.37873 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00251 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.47404 * 179.97438 * 9 7 2 11 11 C 1.81400 * 103.00036 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46933 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47207 * 179.97438 * 12 11 10 14 14 S 1.81400 * 109.47423 * 179.97438 * 13 12 11 15 15 C 1.81396 * 102.99742 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.47003 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 90.00226 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.98162 * 16 15 14 22 22 H 0.97001 * 119.99866 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47067 * 59.99312 * 9 7 2 24 24 H 1.09003 * 109.46484 * 299.99637 * 9 7 2 25 25 H 1.08997 * 109.47164 * 59.99953 * 11 10 9 26 26 H 1.08998 * 109.47214 * 299.99847 * 11 10 9 27 27 H 1.09000 * 109.47748 * 60.00043 * 12 11 10 28 28 H 1.09001 * 109.47536 * 299.99883 * 12 11 10 29 29 H 1.09000 * 109.46639 * 59.99478 * 13 12 11 30 30 H 1.09001 * 109.46870 * 300.00405 * 13 12 11 31 31 H 1.09005 * 109.47589 * 60.00470 * 15 14 13 32 32 H 1.09000 * 109.47576 * 299.99628 * 15 14 13 33 33 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 34 34 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 37 37 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3366 0.0013 12 6 2.2086 -6.6041 0.0020 13 6 1.2992 -7.8346 0.0034 14 16 2.3152 -9.3374 0.0035 15 6 1.0794 -10.6653 0.0058 16 6 1.7773 -12.0010 0.0055 17 6 2.0990 -12.6130 1.2026 18 6 2.7387 -13.8385 1.2022 19 6 3.0561 -14.4522 0.0050 20 6 2.7392 -13.8377 -1.1921 21 6 2.0953 -12.6144 -1.1918 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8904 25 1 0.7222 -5.3237 -0.8884 26 1 0.7229 -5.3232 0.8915 27 1 2.8378 -6.6170 0.8920 28 1 2.8378 -6.6179 -0.8879 29 1 0.6697 -7.8220 -0.8864 30 1 0.6703 -7.8206 0.8935 31 1 0.4547 -10.5820 -0.8836 32 1 0.4567 -10.5806 0.8964 33 1 1.8505 -12.1337 2.1380 34 1 2.9904 -14.3164 2.1374 35 1 3.5555 -15.4098 0.0048 36 1 2.9911 -14.3151 -2.1275 37 1 1.8433 -12.1366 -2.1270 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:47 Heat of formation + Delta-G solvation = -5.560166 kcal Electronic energy + Delta-G solvation = -15640.419507 eV Core-core repulsion = 13019.891086 eV Total energy + Delta-G solvation = -2620.528420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51603 -34.62673 -33.18541 -33.14574 -31.22751 -28.55375 -27.77807 -26.95757 -23.21443 -22.91415 -21.99482 -21.22191 -17.25184 -16.58734 -16.26985 -15.76358 -15.51283 -15.38525 -15.33596 -14.61017 -14.27962 -13.79758 -13.68936 -13.40217 -13.15200 -12.81282 -12.81009 -12.43845 -12.05160 -11.80362 -11.71922 -11.36511 -11.34351 -10.94194 -10.77281 -10.62359 -10.18571 -9.90593 -9.51953 -9.25066 -8.98724 -8.85873 -8.62204 -7.82116 -6.69299 -6.19754 -4.23646 0.70334 1.08018 1.70756 2.41817 2.67250 3.25181 3.32311 3.39139 3.53064 3.87858 4.28941 4.35677 4.41978 4.67519 4.79315 4.82599 4.83949 4.95909 5.12465 5.17527 5.19494 5.26911 5.28851 5.40616 5.56251 5.63410 5.70491 5.86539 6.11134 6.11183 6.17994 6.22935 6.28825 6.64549 7.09185 7.10742 7.75492 8.01318 8.78684 9.39476 10.91679 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.071654 B = 0.002040 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.674234 B =13724.261218 C =13789.238287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.092 3.908 10 S -0.308 6.308 11 C -0.084 4.084 12 C -0.083 4.083 13 C -0.083 4.083 14 S -0.248 6.248 15 C -0.050 4.050 16 C -0.071 4.071 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.101 4.101 22 H 0.265 0.735 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 -27.764 0.012 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.055 4.055 10 S -0.081 6.081 11 C -0.235 4.235 12 C -0.122 4.122 13 C -0.233 4.233 14 S -0.018 6.018 15 C -0.198 4.198 16 C -0.073 4.073 17 C -0.121 4.121 18 C -0.139 4.139 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.121 4.121 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.175 -27.649 0.011 27.830 hybrid contribution -2.409 1.001 0.002 2.609 sum 0.766 -26.647 0.012 26.658 Atomic orbital electron populations 1.69965 1.06154 1.27212 1.49887 1.24978 0.94990 0.99334 0.94687 0.86287 0.80119 0.82491 0.77716 1.19383 1.20734 1.20737 1.20741 0.93549 0.88745 1.51993 0.91372 1.21042 0.93616 0.90861 1.00004 1.86653 1.21274 1.02146 1.98058 1.23165 1.00459 0.95730 1.04108 1.21019 0.97155 0.89668 1.04370 1.23488 1.00382 0.94333 1.05062 1.87225 1.16342 1.00184 1.98076 1.22291 0.98584 0.93172 1.05730 1.19242 0.99960 0.94160 0.93888 1.21073 0.98209 0.95318 0.97526 1.21149 0.98978 0.95498 0.98259 1.21203 0.99836 0.99996 0.92634 1.21149 0.98949 0.95519 0.98261 1.21072 0.98198 0.95339 0.97519 0.92576 0.94664 0.94656 0.90872 0.90878 0.90282 0.90278 0.89945 0.89939 0.89198 0.89195 0.85774 0.85867 0.86029 0.85865 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.59 9.13 -34.44 -0.31 -14.90 16 8 H 0.07 1.95 7.71 -52.48 -0.40 1.55 16 9 C 0.09 2.41 5.70 36.01 0.21 2.61 16 10 S -0.31 -6.78 21.66 -107.50 -2.33 -9.11 16 11 C -0.08 -1.40 5.94 37.16 0.22 -1.18 16 12 C -0.08 -1.15 5.23 -26.73 -0.14 -1.29 16 13 C -0.08 -0.93 5.94 37.16 0.22 -0.71 16 14 S -0.25 -2.85 21.72 -107.50 -2.33 -5.19 16 15 C -0.05 -0.44 6.07 36.01 0.22 -0.22 16 16 C -0.07 -0.65 5.14 -104.62 -0.54 -1.18 16 17 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 18 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 19 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 20 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 21 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 24 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.09 0.70 8.08 -51.92 -0.42 0.28 16 32 H 0.09 0.70 8.09 -51.92 -0.42 0.28 16 33 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -30.39 343.29 -11.83 -42.22 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.88 Total: -2.62 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.19 Total: -21.57 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -4.66 Total: -14.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.39 -11.83 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.663 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds